PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539013.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 268aa    MW: 28704.3 Da    PI: 4.5945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539013.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.8e-161565148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                       +g W++eEd++l d++ ++G g+W++ +++      gRt++++k++w++yl
  KN539013.1_FGP006 15 KGLWSPEEDQKLRDYILRHGHGCWSALPAKAArhlPGRTDNEVKNYWNSYL 65
                       678*******************77776544444444*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.1E-151072IPR009057Homeodomain-like
PROSITE profilePS5129421.7061069IPR017930Myb domain
SMARTSM007171.8E-121467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-211466IPR009057Homeodomain-like
PfamPF002491.1E-131565IPR001005SANT/Myb domain
CDDcd001672.71E-141865No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGCKSCEKPR PNYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKAARHLP GRTDNEVKNY  60
WNSYLKKRVE SGGGKTSQGP PTTPASAASS PADSDDSHSL QQKPHEPANS DSSEPAHESS  120
SASADSSCLT VTTDHPPVSR PHAAVTPKVM FADWLDMEYI CGQVAAAPGL DAAGFAVVGA  180
AAGDQQQQQQ VMSQDGSVHQ TDGLSCGVDD SSLQQQQQQE GFGGNGGCWD FQEQFDSIDQ  240
MQASGGGGFC DLLSMSDFDL WAELERTA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539013.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041330.0AP004133.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_G03.
GenBankAP0047680.0AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankEU8372490.0EU837249.1 Oryza sativa Japonica Group clone KCS157B05 ATMYB4-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622999.11e-142transcription factor MYB21
TrEMBLA0A0E0K2W81e-147A0A0E0K2W8_ORYPU; Uncharacterized protein
STRINGOPUNC02G23410.11e-148(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-19myb domain protein 19