PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539007.1_FGP016
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 274aa    MW: 30151.7 Da    PI: 6.875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539007.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.91.8e-44101331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrF P+deelv++yL kkv++++ +   ++ e+ i+ ++      k+  + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev
  KN539007.1_FGP016  10 LPPGFRFYPSDEELVCHYLYKKVSNERASQ-GTLVELAILCAHAD-VA-KL--TASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREV 96 
                        79*************************888.67888887777644.43.23..458************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s  ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl
  KN539007.1_FGP016  97 RSPaTRAVVGMRKTLVFYQGRAPNGVKSGWVMHEFRL 133
                        **977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-538152IPR003441NAC domain
PROSITE profilePS5100552.27510152IPR003441NAC domain
PfamPF023651.2E-2711133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGLREIESTL PPGFRFYPSD EELVCHYLYK KVSNERASQG TLVELAILCA HADVAKLTAS  60
EWYFFSFRDR KYATGSRTNR ATKTGYWKAT GKDREVRSPA TRAVVGMRKT LVFYQGRAPN  120
GVKSGWVMHE FRLDSPHSPP KEDWVLCRVF QKSKGDGEQD NPTSAASPAA TFAGSSQAAV  180
PGQAAYSSDD HTGSSMGFAP RQNEILDSSS HQLLNLAMLQ CNSVLDHFPQ EVNSSPMMGL  240
AGSIGIGDEY GFFYDTGFEE TASLGGMRFP QGWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-4211524165NO APICAL MERISTEM PROTEIN
1ut4_B5e-4211524165NO APICAL MERISTEM PROTEIN
1ut7_A5e-4211524165NO APICAL MERISTEM PROTEIN
1ut7_B5e-4211524165NO APICAL MERISTEM PROTEIN
3swm_A6e-4211527168NAC domain-containing protein 19
3swm_B6e-4211527168NAC domain-containing protein 19
3swm_C6e-4211527168NAC domain-containing protein 19
3swm_D6e-4211527168NAC domain-containing protein 19
3swp_A6e-4211527168NAC domain-containing protein 19
3swp_B6e-4211527168NAC domain-containing protein 19
3swp_C6e-4211527168NAC domain-containing protein 19
3swp_D6e-4211527168NAC domain-containing protein 19
4dul_A5e-4211524165NAC domain-containing protein 19
4dul_B5e-4211524165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539007.1_FGP016
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0629550.0AK062955.1 Oryza sativa Japonica Group cDNA clone:001-109-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634235.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE69e-54NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D9ZN590.0A0A0D9ZN59_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GXN10.0A0A0E0GXN1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PBK50.0A0A0E0PBK5_ORYRU; Uncharacterized protein
TrEMBLA2XVI60.0A2XVI6_ORYSI; Uncharacterized protein
TrEMBLQ7X7J40.0Q7X7J4_ORYSJ; NAC transcription factor
STRINGOGLUM04G18750.10.0(Oryza glumipatula)
STRINGORUFI04G20200.10.0(Oryza rufipogon)
STRINGOS04T0515900-010.0(Oryza sativa)
STRINGONIVA04G01950.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-71NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]