PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539006.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8326.6 Da    PI: 8.983
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539006.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.6e-151153244
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       rie+  +r + f kRr+ + KKAeEL vLCda v  +++s +g
  KN539006.1_FGP007 11 RIEDRVRRGICFRKRRAELEKKAEELAVLCDAHVGFVVLSCSG 53
                       8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.516253IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-12264IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-16464IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-12424IPR002100Transcription factor, MADS-box
PfamPF003195.1E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-122439IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-123960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRRAELE KKAEELAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATDLEL QFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539006.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550972e-96CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.12e-29truncated transcription factor CAULIFLOWER D-like isoform X1
RefseqXP_015637118.12e-29truncated transcription factor CAULIFLOWER D-like isoform X2
RefseqXP_025880634.19e-30MADS-box transcription factor 33-like isoform X3
RefseqXP_025880635.11e-29MADS-box transcription factor 33-like isoform X4
TrEMBLQ0JDP71e-39Q0JDP7_ORYSJ; Os04g0387400 protein
STRINGORUFI04G11600.12e-33(Oryza rufipogon)
STRINGONIVA04G08300.19e-34(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117