PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539002.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 232aa    MW: 25779.3 Da    PI: 9.8309
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539002.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.62.6e-32109754129
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrle 129
                        + kewyfFs rd+kyatg+r+nrat+sgyWkatgkd++++++      +           vg++ktLvfy+grapkg+kt+Wvmhe+rle
  KN539002.1_FGP007  10 GGKEWYFFSLRDRKYATGHRTNRATRSGYWKATGKDRSITRRssissgE--PsssaaaaaVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 97 
                        579**************************************86666550..155566666***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.6091115IPR003441NAC domain
SuperFamilySSF1019411.44E-368115IPR003441NAC domain
PfamPF023651.5E-151396IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAKNYAACVG GKEWYFFSLR DRKYATGHRT NRATRSGYWK ATGKDRSITR RSSISSGEPS  60
SSAAAAAVGM RKTLVFYRGR APKGRKTEWV MHEFRLEPQP LHLKEDWVLC RVFYKTRQTI  120
PSPSSEEAVT LPNELDLPAT PSLPPLIDAY IAFDSAPTTT TSMVGSYEQV SCFSGLPALP  180
MKGSISFGDL LAMDTSAEKK AIRVLHNSNT AKLEFSPDWG QESGLSQMWN PQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-28711569168NAC domain-containing protein 19
3swm_B1e-28711569168NAC domain-containing protein 19
3swm_C1e-28711569168NAC domain-containing protein 19
3swm_D1e-28711569168NAC domain-containing protein 19
3swp_A1e-28711569168NAC domain-containing protein 19
3swp_B1e-28711569168NAC domain-containing protein 19
3swp_C1e-28711569168NAC domain-containing protein 19
3swp_D1e-28711569168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539002.1_FGP007
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201970.0AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648319.11e-166NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE67e-54NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0I8911e-164A0A0E0I891_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QFI71e-164A0A0E0QFI7_ORYRU; Uncharacterized protein
TrEMBLA2YS821e-164A2YS82_ORYSI; Uncharacterized protein
TrEMBLA3BQJ71e-164A3BQJ7_ORYSJ; Uncharacterized protein
TrEMBLQ6Z1A31e-164Q6Z1A3_ORYSJ; Os08g0200600 protein
STRINGORUFI08G06500.11e-165(Oryza rufipogon)
STRINGOS08T0200600-011e-165(Oryza sativa)
STRINGONIVA08G05790.11e-165(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.12e-52NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]