PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539002.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 871aa MW: 96899.9 Da PI: 6.9403 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 45 | 2.2e-14 | 79 | 136 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEE.EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsY.YrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++Wr Gq +++g +p + Y+C+ ++C v+k + rsa d++++e++ +g Hnh+ KN539002.1_FGP006 79 DDGFHWRMCGQSTIQGGLCPTVFsYQCALPNCGVRKSITRSA-DGQTIETVCKGCHNHP 136 8*******************9988******************.***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.62E-14 | 72 | 137 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.3 | 73 | 138 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-12 | 74 | 137 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.1E-7 | 78 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-13 | 79 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50808 | 9.908 | 251 | 310 | IPR003656 | Zinc finger, BED-type |
SMART | SM00614 | 1.1E-16 | 251 | 302 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 1.19E-7 | 254 | 302 | No hit | No description |
Pfam | PF02892 | 9.9E-7 | 266 | 309 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF53098 | 9.1E-89 | 387 | 856 | IPR012337 | Ribonuclease H-like domain |
Pfam | PF14372 | 3.8E-23 | 628 | 727 | IPR025525 | hAT-like transposase, RNase-H fold |
Pfam | PF05699 | 1.1E-16 | 772 | 854 | IPR008906 | HAT, C-terminal dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 871 aa Download sequence Send to blast |
MATPPPPRTG DRNGDASPCW KYLFLPLDRV QGCLVGKQIG YGESSRTTAQ HVGSSSSTPV 60 IQVAALPSHA YYGNIDVADD GFHWRMCGQS TIQGGLCPTV FSYQCALPNC GVRKSITRSA 120 DGQTIETVCK GCHNHPRQSL RWLGDGSERL EPISQEIVLL EASDASGAAG GPSVPGTGNG 180 HGQSSGSSDS CRDDDGDLGI DGNASVGDAN AVKSGQVPAP AKEITVHSAC EVDILNNSVR 240 HENPQPRKKV RSKSTVWEEF EVVLIDGKVQ TAECKHCKKG LSAKTSGGTS HLIRHLKICP 300 AQHGTSRVQK KCSSLADLPI VKSWKDDQES SLDEIIRSIV SNLCPFSAMY GASFAQFLAG 360 RNPVLNMVQQ ATVEEKFLSV FHNEKMKLKE KITATPGGVF LSLGEWQRLF YIQVRVACLT 420 VHFIDEDWKI NRKTIRCSLS VFGKSDILSL YPHWQSDIVL AEKVLKEVVQ DWGLLDKLLG 480 VTLQRSVDKK APLHLEDDIT GRNYLLSKCK LLSIPCMVDA LHELMDSTVL DMESTWSHYM 540 TSSPERKQKY QEVLSQLHLD RPSLGSKGWY FTFYFSEAAL QFIKSFPLPD AKPNCQSGPW 600 EPSFDDLEAT ENYCKIARSA YRVIKVVSGP HNMTFNSYFH VIWSLRAAIQ ELPSIKNIGR 660 VFDVAYMQKK FDRNWKKWYL WLSIAVVLDP RYKLEFIELC FRQAFSHVAG MYFSEVRAKL 720 HELYIQYSYV NEQSKEILDH KNNCSDIQIS APLHNKGQNS TTAQAAVEEF KELYEYLGGG 780 LCTQDDSFDI LKWWRGNSSA YPTLAMMARD MLAISGCAVS SESAFDQCDQ RAELFDGKLR 840 PETTEALICA QSWIKSSGTA DADDGNKNTS F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539002.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103696 | 0.0 | AK103696.1 Oryza sativa Japonica Group cDNA clone:J033136J23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648157.1 | 0.0 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 | ||||
TrEMBL | Q0J7E9 | 0.0 | Q0J7E9_ORYSJ; Os08g0198900 protein | ||||
STRING | ORUFI08G06360.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14032 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 3e-12 | WRKY DNA-binding protein 33 |