PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539002.1_FGP006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 871aa    MW: 96899.9 Da    PI: 6.9403
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539002.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY452.2e-1479136259
                        --SS-EEEEEEE--TT-SS-EEE.EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsY.YrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++Wr  Gq +++g  +p  + Y+C+ ++C v+k + rsa d++++e++ +g Hnh+
  KN539002.1_FGP006  79 DDGFHWRMCGQSTIQGGLCPTVFsYQCALPNCGVRKSITRSA-DGQTIETVCKGCHNHP 136
                        8*******************9988******************.***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.62E-1472137IPR003657WRKY domain
PROSITE profilePS5081112.373138IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-1274137IPR003657WRKY domain
SMARTSM007749.1E-778137IPR003657WRKY domain
PfamPF031064.2E-1379136IPR003657WRKY domain
PROSITE profilePS508089.908251310IPR003656Zinc finger, BED-type
SMARTSM006141.1E-16251302IPR003656Zinc finger, BED-type
SuperFamilySSF576671.19E-7254302No hitNo description
PfamPF028929.9E-7266309IPR003656Zinc finger, BED-type
SuperFamilySSF530989.1E-89387856IPR012337Ribonuclease H-like domain
PfamPF143723.8E-23628727IPR025525hAT-like transposase, RNase-H fold
PfamPF056991.1E-16772854IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MATPPPPRTG DRNGDASPCW KYLFLPLDRV QGCLVGKQIG YGESSRTTAQ HVGSSSSTPV  60
IQVAALPSHA YYGNIDVADD GFHWRMCGQS TIQGGLCPTV FSYQCALPNC GVRKSITRSA  120
DGQTIETVCK GCHNHPRQSL RWLGDGSERL EPISQEIVLL EASDASGAAG GPSVPGTGNG  180
HGQSSGSSDS CRDDDGDLGI DGNASVGDAN AVKSGQVPAP AKEITVHSAC EVDILNNSVR  240
HENPQPRKKV RSKSTVWEEF EVVLIDGKVQ TAECKHCKKG LSAKTSGGTS HLIRHLKICP  300
AQHGTSRVQK KCSSLADLPI VKSWKDDQES SLDEIIRSIV SNLCPFSAMY GASFAQFLAG  360
RNPVLNMVQQ ATVEEKFLSV FHNEKMKLKE KITATPGGVF LSLGEWQRLF YIQVRVACLT  420
VHFIDEDWKI NRKTIRCSLS VFGKSDILSL YPHWQSDIVL AEKVLKEVVQ DWGLLDKLLG  480
VTLQRSVDKK APLHLEDDIT GRNYLLSKCK LLSIPCMVDA LHELMDSTVL DMESTWSHYM  540
TSSPERKQKY QEVLSQLHLD RPSLGSKGWY FTFYFSEAAL QFIKSFPLPD AKPNCQSGPW  600
EPSFDDLEAT ENYCKIARSA YRVIKVVSGP HNMTFNSYFH VIWSLRAAIQ ELPSIKNIGR  660
VFDVAYMQKK FDRNWKKWYL WLSIAVVLDP RYKLEFIELC FRQAFSHVAG MYFSEVRAKL  720
HELYIQYSYV NEQSKEILDH KNNCSDIQIS APLHNKGQNS TTAQAAVEEF KELYEYLGGG  780
LCTQDDSFDI LKWWRGNSSA YPTLAMMARD MLAISGCAVS SESAFDQCDQ RAELFDGKLR  840
PETTEALICA QSWIKSSGTA DADDGNKNTS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539002.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036960.0AK103696.1 Oryza sativa Japonica Group cDNA clone:J033136J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648157.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
TrEMBLQ0J7E90.0Q0J7E9_ORYSJ; Os08g0198900 protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-12WRKY DNA-binding protein 33