PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538997.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 360aa    MW: 38766.8 Da    PI: 9.9043
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538997.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.64.3e-21223285163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L+ e+++l++ ++kl+ e+
  KN538997.1_FGP006 223 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLEN 285
                        689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-29193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1704.3E-17220282No hitNo description
SMARTSM003381.7E-20223287IPR004827Basic-leucine zipper domain
PfamPF001703.9E-19224285IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.599225288IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10227281No hitNo description
CDDcd147022.08E-21228276No hitNo description
PROSITE patternPS000360230245IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGNDEAVVTQ KMGKAPSPPK DHPALSPYLD WSNMQAYYGP GILPPTFFSP GIAAGHTPPP  60
FIWGPQPLVP SAFGKPYAAI YPPGGAFSHP FMPLMVSPLS MEPAKSVNSK DNCSNKKMKE  120
IDGAAVSTGS GNSEKTRGDC SLEGSSDGNN QKASGTPKKR SIDDRPKSGV ETGGALTPND  180
RPSEQAALPN LCIPVTAIKP DVSTASDFRV IATPVTEVPT KDDKESKRER RKQSNRESAR  240
RSRLRKQAET EELARKVELL TAENTSLRRE ISRLTESSKK LRLENSALME KLTETGPDEA  300
QEVPPVKTKT QRARGVENFL SMIDKSGTPR SSGHMDHAIA TPKLRQLLGS GLATDAVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245RRSRLRK
2239246RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538997.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3331840.0AY333184.1 Oryza sativa (japonica cultivar-group) G-box binding protein mRNA, complete cds.
GenBankAY6069410.0AY606941.1 Oryza sativa (indica cultivar-group) salt-stress inducible bZIP protein mRNA, complete cds.
GenBankCT8338380.0CT833838.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650461.10.0common plant regulatory factor 1 isoform X1
RefseqXP_015650471.10.0common plant regulatory factor 1 isoform X1
TrEMBLA0A0D3ES270.0A0A0D3ES27_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YCN50.0A0A0D9YCN5_9ORYZ; Uncharacterized protein
TrEMBLI1NQC00.0I1NQC0_ORYGL; Uncharacterized protein
STRINGOGLUM01G29060.10.0(Oryza glumipatula)
STRINGORGLA01G0206000.10.0(Oryza glaberrima)
STRINGOBART01G25300.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.27e-52G-box binding factor 3