PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538997.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 138aa MW: 15192.1 Da PI: 9.4079 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 61.4 | 1.7e-19 | 27 | 70 | 1 | 41 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers 41 ldDg++WrKYGqK++ g+++pr+Y+rCt++ gC++ k+ + + KN538997.1_FGP002 27 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNASKQEQNA 70 59***************************98999*****96654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-19 | 14 | 70 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-17 | 20 | 70 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.8 | 22 | 72 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-20 | 27 | 85 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-17 | 28 | 70 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 138 aa Download sequence Send to blast |
MINICRKTLP KWSKQVKVRS VQDVGPLDDG FSWRKYGQKD ILGAKYPRAY FRCTHRHTQG 60 CNASKQEQNA VSVAFTSMAV VNASTSSPFV SPATSDCQVS YELGGGSMAG VRNVPDVELA 120 SKTNSSMGDD NYKYSSYF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-15 | 15 | 70 | 2 | 59 | Disease resistance protein RRS1 |
5w3x_D | 4e-15 | 15 | 70 | 2 | 59 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538997.1_FGP002 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003212 | 9e-94 | AP003212.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05. | |||
GenBank | AP003294 | 9e-94 | AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04. | |||
GenBank | AP014957 | 9e-94 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY676926 | 9e-94 | AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds. | |||
GenBank | CP012609 | 9e-94 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632319.1 | 8e-79 | probable WRKY transcription factor 53 | ||||
TrEMBL | B9EYE9 | 2e-81 | B9EYE9_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA01G0204900.1 | 2e-79 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-25 | WRKY family protein |