PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538987.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 552aa    MW: 59736.7 Da    PI: 6.8595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538987.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.4e-32190247260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkk +ers  d++++e++Y+g+Hnh+k
  KN538987.1_FGP006 190 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCDVKKLLERSL-DGQITEVVYKGRHNHPK 247
                        8****************************************.***************85 PP
2WRKY106.61.3e-33343401159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++dpk v++tYeg+Hnhe
  KN538987.1_FGP006 343 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNTGCPVRKHVERASHDPKSVITTYEGKHNHE 401
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27183248IPR003657WRKY domain
PROSITE profilePS5081123.789184248IPR003657WRKY domain
SuperFamilySSF1182907.72E-25188248IPR003657WRKY domain
SMARTSM007748.3E-35189247IPR003657WRKY domain
PfamPF031063.0E-24190246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-38328403IPR003657WRKY domain
SuperFamilySSF1182901.27E-29335403IPR003657WRKY domain
PROSITE profilePS5081138.526338403IPR003657WRKY domain
SMARTSM007741.7E-39343402IPR003657WRKY domain
PfamPF031062.1E-26344401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSPARLPISR EPCLTIPAGF SPSALLESPV LLTNFKVEPS PTTGTLSMAA IMNKSANPDI  60
LPSPRDKTSG STHEDGGSRD FEFKPHLNSS SQSAASAIND PKKHETSMKN ESLNTAPSSD  120
DMMIDNIPLC SRESTLAVNV SSVPSQPVGI VGLTDSSPAE VGTSELHQMN SSGNAMQESQ  180
PESVAEKSAE DGYNWRKYGQ KHVKGSENPR SYYKCTHPNC DVKKLLERSL DGQITEVVYK  240
GRHNHPKPQP NRRLSAGAVP PSQGEERYDG VATTDDKSSN VLSNLGNAVH TAGQESPIYT  300
TECVVYNCSN RKMESAAIDA ALMGKPNREP RVVVQTVSEV DILDDGYRWR KYGQKVVKGN  360
PNPRSYYKCT NTGCPVRKHV ERASHDPKSV ITTYEGKHNH EVPASRNASH EMSTPPMKPV  420
VHPINSNMQG LGGMMRACEP RTFPNQYSQA AESDTISLDL GVGISPNHSD ATNQLQSSVS  480
DQMQYQMQPM GSVYSNMGLP AMAMPTMAGN AASSIYGSRE EKPSEGFTFK ATPMDHSANL  540
CYSTAGNLVM GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37190404878Probable WRKY transcription factor 4
2lex_A5e-37190404878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538987.1_FGP006
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705370.0AK070537.1 Oryza sativa Japonica Group cDNA clone:J023062H03, full insert sequence.
GenBankAY3418500.0AY341850.1 Oryza sativa (japonica cultivar-group) WRKY9 mRNA, complete cds.
GenBankHQ8588340.0HQ858834.1 Oryza sativa Japonica Group isolate UT1333 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646742.10.0WRKY transcription factor SUSIBA2 isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A0D3GSV30.0A0A0D3GSV3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ALX60.0A0A0E0ALX6_9ORYZ; Uncharacterized protein
TrEMBLI1QEP40.0I1QEP4_ORYGL; Uncharacterized protein
STRINGOGLUM07G19920.10.0(Oryza glumipatula)
STRINGORGLA07G0258600.10.0(Oryza glaberrima)
STRINGOBART07G20140.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-119WRKY family protein