PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538984.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 187aa    MW: 20932.2 Da    PI: 4.7085
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538984.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.92e-142401956
                       HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox 19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  KN538984.1_FGP001  2 FHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 40
                       666588999*****************************9 PP
2HD-ZIP_I/II103.81.4e-332781893
        HD-ZIP_I/II 18 Feeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                       F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+ +l+e
  KN538984.1_FGP001  2 FHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHE 78
                       888877******************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.4E-4146IPR001356Homeobox domain
PROSITE profilePS5007114.236142IPR001356Homeobox domain
PfamPF000468.2E-12240IPR001356Homeobox domain
CDDcd000861.59E-12443No hitNo description
SuperFamilySSF466893.76E-13553IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-15549IPR009057Homeodomain-like
PRINTSPR000313.9E-71322IPR000047Helix-turn-helix motif
PROSITE patternPS0002701740IPR017970Homeobox, conserved site
PRINTSPR000313.9E-72238IPR000047Helix-turn-helix motif
PfamPF021834.6E-144283IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MFHAHHAKLE PREKAELARE LGLQPRQVAI WFQNKRARWR SKQLEHDYAA LRSKYDALHS  60
RVESLKQEKL ALTVQLHELR ERLREREERS GNGGAATTAA SSSSCNGSGS EEVDDDKRNV  120
AAGCLDLEPP ESCVLGGATC ATPADVSVES DQCDDQLDYE EGLFPESFCA TPELWEPWPL  180
VEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538984.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1091770.0AK109177.1 Oryza sativa Japonica Group cDNA clone:002-155-H12, full insert sequence.
GenBankAY2244400.0AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634133.11e-108homeobox-leucine zipper protein HOX22
SwissprotQ01IK01e-109HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-109HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A0E0KTD11e-108A0A0E0KTD1_ORYPU; Uncharacterized protein
STRINGOPUNC04G17950.11e-108(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-28homeobox 7