PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538983.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 300aa    MW: 32834.5 Da    PI: 7.3321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538983.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30156214259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+++Hnh+
  KN538983.1_FGP009 156 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPTMLVVTYTSDHNHP 214
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.374150216IPR003657WRKY domain
SuperFamilySSF1182907.19E-26154216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30154216IPR003657WRKY domain
SMARTSM007741.4E-36155215IPR003657WRKY domain
PfamPF031061.6E-25157214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCDSLFWQSS ADQGDLSDVV RASLQLQTAP RHQAASPPYV HLLGGGGGGG EDQLAAVSQH  60
ADEQQQQQSM VDASAACDLL HALLPPPPVG QQVQQQGASR TRTRTIEEDT TGDGEELFAG  120
AHYVVPPIKR RKSQTKKVVC IPAGASGGGG GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR  180
CSSSKGCSAR KQVERSRADP TMLVVTYTSD HNHPWPTHRN ALAGSTRPNS SNIRLQDTTP  240
VHHQTQTGHD HLTTTHLKQE DVIISPSLLQ PDHHQLCTII DTKHHLLFHQ DYPHSFGFFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24132217280Disease resistance protein RRS1
5w3x_D3e-24132217280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538983.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546100.0KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613758.11e-177protein WRKY1
RefseqXP_015613759.11e-177protein WRKY1
TrEMBLA2ZAL71e-176A2ZAL7_ORYSI; Uncharacterized protein
TrEMBLQ7XBT01e-176Q7XBT0_ORYSJ; Putative DNA-binding protein
STRINGORGLA10G0149800.11e-176(Oryza glaberrima)
STRINGOBART10G19790.11e-176(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-54WRKY DNA-binding protein 35