PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538980.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 292aa    MW: 33244.3 Da    PI: 6.2273
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538980.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.23.9e-19125190359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST......TEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp......kvveitYegeHnhe 59 
                        Dgy+WrKYGqK++ +++++rsYYrCt +   gC+++k v++ ++d+      k+ ++ Y g+H+++
  KN538980.1_FGP010 125 DGYEWRKYGQKSISKTKHSRSYYRCTNQkgqGCMATKTVQQIENDNgsnsvvKLYNVDYFGKHTCK 190
                        9**************************99999********99888533322245678899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-21109190IPR003657WRKY domain
SuperFamilySSF1182901.83E-19118191IPR003657WRKY domain
SMARTSM007741.5E-27123191IPR003657WRKY domain
PfamPF031066.6E-21125190IPR003657WRKY domain
PROSITE profilePS5081115.732125169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSANIESFCC IDHRMIIQEM KREHGLLIDL KNHIIPILRF NNVQADHIVH AFDDILCCSN  60
GIISKIQAEV CDGGNSDPGI DKGNGRNIAL DNMKVFIEDG TVTKNKRRKN AQHTGSVVTA  120
TPDYDGYEWR KYGQKSISKT KHSRSYYRCT NQKGQGCMAT KTVQQIENDN GSNSVVKLYN  180
VDYFGKHTCK FGNEMVCPDI VETDSPKYSS VNDKYASTRL TNHSDDHQPK NDMKPENLFA  240
VPDMSLFSEN MWDIIFEDVT MNSTFSLEQE AKDSWIKHQQ DSTIHLWADE LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-13116190269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538980.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058290.0AP005829.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1008E06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611479.10.0disease resistance protein RRS1 isoform X1
TrEMBLA0A0E0QNV30.0A0A0E0QNV3_ORYRU; Uncharacterized protein
TrEMBLQ6H4S70.0Q6H4S7_ORYSJ; WRKY transcription factor 64-like protein
STRINGORUFI09G03410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1931588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.16e-17WRKY DNA-binding protein 64