PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538977.1_FGP017
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 635aa    MW: 69410.5 Da    PI: 4.6606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538977.1_FGP017genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12439486355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++h + ErrRR+++N+ f  L++++P+        K++Ka+iL +++ Y+k+L+
  KN538977.1_FGP017 439 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 486
                        5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4813236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.859436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17439501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.90E-15439490No hitNo description
PfamPF000105.1E-10440486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16440495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-15442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MEETPLPSGK NFRSQLAAAA RNINWTYAIF WSISTSRPGA LTWKDGFYNG EIKTRKITNS  60
MNLTADELVL QRSEQLRELY DSLLSGECGH RARRPVAALS PEDLGDTEWY YVVCMTYAFR  120
PGQGLPGKSF ASNEFVWLSN AQSADRKLFH RALIAKNLYY ILLHFHAILA ISSLDYSFLF  180
LIMYDDDGAA DLPTSQSAPI KTIVCVPFIM HGVLELGTTD PISEDPALVD RIAASFWDTP  240
PRAAFSSEAR DADIVVFEDL DHGNAAVEET TTTTVPGEPH AVAGGEVAEC EPNANNDLEQ  300
ITMDDIGELY SLCEELDVVR PLDDDSSSWA VADPWSSFQL VPTSSPAPDQ APAAEATDVD  360
DVVVAALDGS SIDESCRPSP SSFVAWKRTA GSDEVQAVPL ISGEPPQKLL KKAVAGAGAW  420
MNNGDGSAAA MTTQGSSIKN HVMSERRRRE KLNEMFLILK SVVPSIHKVD KASILAETIA  480
YLKELEKRVE ELESSSQPSP CPLETRSRRK CREITGKKVS AGAKRKAPAP EMVASDGDTD  540
GERRHCVSNV NVTIMDNKEV LLELQCQWKE LLMTRVFDAI KGVSLDVLSV QASTSDGLLG  600
LKIQAKVVVS AAKSSQQKCS IYLSVNLCIY VCLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-162423262227Transcription factor MYC3
4ywc_A1e-162423262227Transcription factor MYC3
4ywc_B1e-162423262227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444449ERRRRE
2445450RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538977.1_FGP017
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU398600.0U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880379.10.0anthocyanin regulatory Lc protein isoform X2
SwissprotP135261e-173ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLQ406430.0Q40643_ORYSA; Ra
STRINGOS04T0557800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.39e-56bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]