PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538977.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 626aa    MW: 69774.2 Da    PI: 5.2506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538977.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13552598354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h + ErrRR+++N+ f  L++llP+      +K++Ka+iL +++ Y+k L
  KN538977.1_FGP006 552 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 598
                        5899***********************7.....6***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-1728197IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142153.7E-19210369IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.177549598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17552615IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.46E-15552603No hitNo description
PfamPF000102.2E-10553598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16553610IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14555604IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MASAPPVQEE ALQPGTNHFR SRLAAAVKTR KISNLEDLTA DQLVLRRSEQ LRELYYSLLS  60
GECDHRARKP VAALSPEDIA DTEWYYVVCM TYAFRPGQGY FKKLYKLDQK IRHFTTGNVS  120
HESHVDKNLL YRVVVIDLLV YILPGYPAEA MQAIDLFGCA MLSLQIAKPL YYILQTIVCI  180
PFMSGVLELG TTDPVKTRKI SNLEDLTADQ LVLRRSEQLR ELYYSLLSGE CDHRARKPVA  240
ALSPEDIADT EWYYVVCMTY AFRPGQGYFK KLYKLDQKIR HFTTGNVSHE SHVDKNLLYR  300
VVVIDLLVYI LPGYPAEAMQ AIDLFGCAML SLQIAKPLYT IVCIPFMSGV LELGTTDPVS  360
EDPNLVNRIV AYLKELQFPI CLEVPSCTPS PDETEDDDTV FDGLIEEHQM VILQGEDELG  420
DVVVAGCETN GANPDTITME TDEFYSLCEE LDLDLGSYQL VIPTSARETV AAAAAAANDV  480
DGVAYSRASC FVSWKRAKNP AEKVVAVPMT AGMESSQKLL KKAVGGGTAW TSNIDGRGSV  540
AITTTTPGSS IKSHVMSERR RREKLNEMFL ILKSLLPSVR KVDKASILAE TITYLKVLEK  600
RVKELESSSR EPSRWCPTEI GQGKAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1557562ERRRRE
2558563RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538977.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0210800.0AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653663.11e-136PREDICTED: anthocyanin regulatory R-S protein-like
RefseqXP_015692285.11e-136PREDICTED: anthocyanin regulatory R-S protein-like
TrEMBLI1PNS00.0I1PNS0_ORYGL; Uncharacterized protein
STRINGORGLA04G0183900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-36bHLH family protein