PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538975.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 207aa    MW: 22951.4 Da    PI: 10.9928
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538975.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-212471249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       rie++  rqv fskRr+g +KKA+ELS+LC a+va ++fs+ gk y +
  KN538975.1_FGP002 24 RIESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSF 71
                       8*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.1561575IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-271588IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-301574IPR002100Transcription factor, MADS-box
CDDcd002651.52E-371687No hitNo description
PRINTSPR004043.3E-201737IPR002100Transcription factor, MADS-box
PfamPF003193.1E-252471IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-203752IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-205273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVMVTAAAAR RRPSLGRQKI EIRRIESEEA RQVCFSKRRA GFFKKASELS ILCSADVAAV  60
VFSPAGKAYS FGHPSVEFLL DRFLSSSLPA TAGREEGSSV SVVAELNRQY GELRAMVDAH  120
KARRERAEKT MEKQRQRQRA AWMDPEAEVG RMAPEELMAL GTKLVAVQGG VAARADQMLR  180
DALLLGRRPT TTTTRAPPGF FHLHPHF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538975.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057890.0AP005789.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0563F09.
GenBankAP0058840.0AP005884.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0598D02.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611069.11e-141agamous-like MADS-box protein AGL29
TrEMBLA0A0D3H3N61e-140A0A0D3H3N6_9ORYZ; Uncharacterized protein
TrEMBLI1QLZ51e-140I1QLZ5_ORYGL; Uncharacterized protein
STRINGORGLA09G0007400.11e-140(Oryza glaberrima)
STRINGOBART09G00850.11e-140(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-26AGAMOUS-like 61