PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538971.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 155aa MW: 17461.8 Da PI: 11.7718 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 69 | 111 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eE+e+l a++ +G++ W++Iar ++ gRt++ +k++w+ KN538971.1_FGP005 69 RRAFTEEEEERLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWH 111 678*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-9 | 52 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.57E-21 | 52 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.158 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.30E-12 | 71 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 77 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
MAEVGRGSFA RGGTGGRRRT RGSRTSSRST APRTGTSSPR SSTADQVFVV AGKSCRLRWF 60 NQLDPRINRR AFTEEEEERL MAAHRAYGNK WALIARLFPG RTDNAVKNHW HEGRKQPRSS 120 DQNQAKMVYL VLFQAIKRNC CCETPRLCFA AFAPA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-21 | 52 | 110 | 42 | 100 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538971.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107461 | 1e-118 | AK107461.1 Oryza sativa Japonica Group cDNA clone:002-129-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3B6H1G0 | 1e-37 | A0A3B6H1G0_WHEAT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-38 | myb domain protein 105 |