PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538967.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 105aa MW: 11350 Da PI: 11.1698 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90 | 1.3e-28 | 52 | 101 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s KN538967.1_FGP005 52 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 101 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.716 | 43 | 103 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-35 | 43 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-29 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-27 | 45 | 103 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 45 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-27 | 52 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-29 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-29 | 80 | 101 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MAAAAAGMGG GGGVQQQQET TTTVVQVAAE ASRKKQVEVR CAGRRGRREM RRIEDATSRQ 60 VTFSKRRSGL LKKAFELSVL CDAEVALIVF SPRGRLYQFA SASSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 8e-19 | 45 | 105 | 2 | 62 | Myocyte-specific enhancer factor 2A |
3mu6_B | 8e-19 | 45 | 105 | 2 | 62 | Myocyte-specific enhancer factor 2A |
3mu6_C | 8e-19 | 45 | 105 | 2 | 62 | Myocyte-specific enhancer factor 2A |
3mu6_D | 8e-19 | 45 | 105 | 2 | 62 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538967.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004049 | 1e-157 | AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06. | |||
GenBank | AP006720 | 1e-157 | AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06. | |||
GenBank | AP014958 | 1e-157 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625202.1 | 2e-41 | MADS-box protein SOC1 isoform X1 | ||||
Refseq | XP_015625203.1 | 2e-41 | MADS-box protein SOC1 isoform X2 | ||||
Swissprot | A2Z9Q7 | 2e-31 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
Swissprot | P0C5B2 | 2e-31 | MAD56_ORYSJ; MADS-box transcription factor 56 | ||||
TrEMBL | A0A0E0N8J4 | 2e-42 | A0A0E0N8J4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WZT9 | 2e-42 | A2WZT9_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6YPH1 | 2e-42 | Q6YPH1_ORYSJ; MADS-box protein PTM5-like | ||||
STRING | ORGLA02G0003200.1 | 2e-41 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 3e-28 | AGAMOUS-like 14 |
Publications ? help Back to Top | |||
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