PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538963.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 8918.24 Da PI: 11.0634 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.8e-10 | 14 | 50 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgR 35 rg+W++eEde+l +v+ +G g +W + +++ g gR KN538963.1_FGP013 14 RGPWSPEEDEQLRSYVHSHGIGgNWIALPQKAGlRGR 50 89******************999********996666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-12 | 5 | 53 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.39E-8 | 8 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.259 | 9 | 50 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 4.3E-8 | 14 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.06E-5 | 16 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 80 aa Download sequence Send to blast |
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVH SHGIGGNWIA LPQKAGLRGR HEKIRQKPSR 60 TRPKDGKKPV QSSTVVLFGK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538963.1_FGP013 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC093956 | 6e-69 | AC093956.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1263_E10, complete sequence. | |||
GenBank | AC129717 | 6e-69 | AC129717.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0079H23, complete sequence. | |||
GenBank | AP014961 | 6e-69 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 6e-69 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637875.1 | 6e-26 | transcription factor RAX2 | ||||
Swissprot | Q9SJL7 | 1e-22 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A0D9WJH3 | 2e-25 | A0A0D9WJH3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G20870.1 | 3e-26 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36890.1 | 6e-25 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|