PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538954.1_FGP012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 86aa MW: 10153.6 Da PI: 9.7708 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 63.5 | 3.7e-20 | 49 | 85 | 2 | 37 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+ KN538954.1_FGP012 49 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQ 85 7***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.313 | 43 | 86 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-17 | 45 | 85 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-18 | 45 | 85 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-9 | 48 | 86 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.1E-17 | 50 | 85 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MLDELTRSYS ALYHQYLQVT QQQNHRHPDH HLIMNNISNN RPNSLTQISD GCQWRKYGQK 60 MAKGNPCPRA YYRCTMAIGC PVRKQF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538954.1_FGP012 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002480 | 5e-54 | AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05. | |||
GenBank | AP014957 | 5e-54 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 5e-54 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880607.1 | 4e-50 | WRKY transcription factor 6 isoform X3 | ||||
TrEMBL | J3KYY1 | 3e-42 | J3KYY1_ORYBR; Uncharacterized protein | ||||
STRING | OB01G21870.1 | 5e-43 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 8e-25 | WRKY family protein |