PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538954.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 303aa    MW: 33046.8 Da    PI: 6.91
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538954.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.4e-171050242
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       ri n+  r  tf kRr g+ KKA+EL +LCd++++++++++
  KN538954.1_FGP004 10 RIANDATRRATFKKRRRGLVKKASELATLCDVDACLVVYGE 50
                       899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.867150IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-23160IPR002100Transcription factor, MADS-box
CDDcd002665.57E-34285No hitNo description
PRINTSPR004041.2E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-24392IPR002100Transcription factor, MADS-box
PfamPF003197.3E-181050IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MARKKIVLDR IANDATRRAT FKKRRRGLVK KASELATLCD VDACLVVYGE GDAEPEVWPS  60
TEVAMNVLRQ FRALPEMEQC KKMMNQEDFL RLRIGKLKEQ LRKMDRDNHE RETLILLHDA  120
LQGRLGTYES LSVEQLTSVD CLASARLKAI TDRLVEIRAP NEDGQVLLPP PPPPPPALPA  180
PPPPPAPMLP LAPPPTHVTP ATPLSSMPPP AFHHHHHHQN HFISHRGNDQ NAWLMNVARN  240
GGDLGALVYS AFASSSSSST GGAGTSAAGA APGPDMMDLA NPDMPGFGWP WDDDSAGPSF  300
PPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIVLDRIANDATRRATFKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538954.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878343.11e-171agamous-like MADS-box protein AGL80
TrEMBLA0A0D3EMP81e-172A0A0D3EMP8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Y7141e-172A0A0D9Y714_9ORYZ; Uncharacterized protein
TrEMBLI1NMC71e-172I1NMC7_ORYGL; Uncharacterized protein
STRINGOGLUM01G13490.11e-173(Oryza glumipatula)
STRINGORGLA01G0101700.11e-173(Oryza glaberrima)
STRINGOBART01G12050.11e-173(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-26AGAMOUS-like 80