PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538953.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 87aa MW: 9945.46 Da PI: 8.8112 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.4 | 6.7e-11 | 19 | 46 | 1 | 28 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkl 28 lppGfrFhPtdeelvv+yL++++ ++ KN538953.1_FGP006 19 LPPGFRFHPTDEELVVQYLRRRALCEQR 46 79*******************9887764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-10 | 14 | 43 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.332 | 19 | 87 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-8 | 20 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRR ALCEQRRGQV LLRRAAGGER 60 RRREGEEAAV DCQFAHFFMQ ELIVFVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 63 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538953.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT841566 | 6e-57 | CT841566.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104M04, full insert sequence. | |||
GenBank | KJ690249 | 6e-57 | KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 9e-08 | NAC domain containing protein 16 |