PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538950.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 386aa    MW: 41388.7 Da    PI: 7.8787
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538950.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31136194259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  KN538950.1_FGP009 136 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 194
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109130196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-31130196IPR003657WRKY domain
SuperFamilySSF1182902.22E-26133196IPR003657WRKY domain
SMARTSM007741.4E-37135195IPR003657WRKY domain
PfamPF031067.6E-26137194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASEDQSVPD SPCPRDFTMH AAPLNSFPFL PPCMRARLCL SALCRCPSPL KLNSSGEQAA  60
GDLADIVLRA GGAAAAAVAG GGGIPSTEWQ LPPAEEEEEE EPGLFPLPPK NQARKVVCIP  120
APAAAGGRTS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP  180
NMLVITYTSE HNHPWPTQRN ALAGFTRSHH AKNSSSNSSS SGASSASKNN SSSHSGYHHH  240
HHHQKPLVKA EPNDQSAAAA AATTTASTVP VKEEAAAMEY MATNYKPAGD PAGKEMNAID  300
KDLDPAYMLD WSSTTVVTRA GGSSFMQGEG VFIVIAEHYI LCCWRPKQML LLDEKSIIKT  360
CTSRCDRKLE AAVMKAYVAT VLGEVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25110197280Disease resistance protein RRS1
5w3x_D5e-25110197280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538950.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731000.0AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624748.17e-72probable WRKY transcription factor 14
TrEMBLQ6IEL54e-74Q6IEL5_ORYSI; WRKY transcription factor 66
STRINGOGLUM02G29590.11e-73(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-60WRKY DNA-binding protein 35