PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538949.1_FGP013

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 1195aa MW: 128365 Da PI: 5.3434

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538949.1_FGP013	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.5	8.1e-16	470	508	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk KN538949.1_FGP013 470 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 508 589**********************************96 PP
2	TCR	50.2	5.1e-16	556	595	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ KN538949.1_FGP013 556 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 595 589***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.8E-17	469	510	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.33	470	596	IPR005172	CRC domain
Pfam	PF03638	1.4E-11	472	507	IPR005172	CRC domain
SMART	SM01114	1.7E-17	556	597	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.3E-12	558	594	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1195 aa Download sequence Send to blast
MDTPDRAAAA APAAARAEDS PLFSFIDSLS PIEPLKSAYS ASSIQAYQSL NITSISSIFT 60 SPHDNAQKES KLSKSSFAEF SESEACADES DKNKPSKSSN AVRLFACTST LTQATHKITS 120 SVSEGTVGPP EGSNDLPQPG QFDSGSPDHN TTPCHGVRSD LKQGKCRKLQ AFQAAKTNTS 180 EKRKCLFSTE VQLMDGCQPE KLNDEILGCD WDDLISATSG ELIAYDEDHK GVQLAVSNAE 240 SCGFLLSKLT GDGDISDRTH PSSSTQTYYR ELLMDEDQTE NAQLVPDGEK NISTEEIQDN 300 LYEANGSIPT GYKVETQQQR GMRRRCLVFE AAGYSNRIVQ KESVMDLSVS TCKGKSPVQN 360 HSNPGKTPSP RVLHGIGLHL NALALTSKDK MVCQDPMSSL VPSSATQQEA HGKMLSAGEN 420 FIHSGGELLE LQMDDDCSAG VFLGNDHDSS QSNSPQKKRR KADNGDDGEA CKRCSCKKSK 480 CLKLYCECFA AGVYCSEPCS CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDAG 540 QDITGEDPNN TPASARHKRG CNCKKSSCLK KYCECYQGGV GCSSNCRCEG CKNTFGKRDA 600 AVSTEAEEMK QGGEEAENCG KEKENDLQKA NVQSEDHPFL ELVPITPPFD VSSSLLKPPN 660 FSSAKPPRPT KARSNSSRSS SKAPGAGHSQ KFTKIANSGL NEEMPDILRD DASPGNCVKT 720 SSPNGKRVSP PHNALSVSPS RKGGRKLILK SIPSFPSLIG DASSGSSMNS SESAFNTASP 780 LALVREKCLT SEARHQWPGL LLHLFPACMC PPNLSLIHVK AKGWLVNCDV CVYVGTWILM 840 SGWAYMSMAA TGPAVMNNSP TNFTSRRSCR RRRRLVVARR REAAVGVAVH RRAVEEGEAL 900 VGRALVGPPG DAVLAVVDAA EAEAPLRLAA EVVVRVGEVP EPRQRADPLR DVSGELVARD 960 VELLQRPHPR HGLRQRPLQL VVADVEHGEP PELPDLRRDA GPHAGVEHDE LVQRRRHPPD 1020 AGGDAPPQLD VGEHDHRRRR VAEVGRELEV EVVVVEEERV DLLVEDRRRD LAAEVVEAEV 1080 DVLDVGEAED VLREAAGEAV VADVELVEEG ELGEGVREGA GEAVGVEVEH GEVGEEAELV 1140 GEGGGEVAVV EVDAGDGGGA RVVRRGGAVD AEVAAHVGAA PPAAWFGGLN WGLVS

Sequence ? help Back to Top

Protein Sequence Length: 1195 aa Download sequence Send to blast

MDTPDRAAAA APAAARAEDS PLFSFIDSLS PIEPLKSAYS ASSIQAYQSL NITSISSIFT  60
SPHDNAQKES KLSKSSFAEF SESEACADES DKNKPSKSSN AVRLFACTST LTQATHKITS  120
SVSEGTVGPP EGSNDLPQPG QFDSGSPDHN TTPCHGVRSD LKQGKCRKLQ AFQAAKTNTS  180
EKRKCLFSTE VQLMDGCQPE KLNDEILGCD WDDLISATSG ELIAYDEDHK GVQLAVSNAE  240
SCGFLLSKLT GDGDISDRTH PSSSTQTYYR ELLMDEDQTE NAQLVPDGEK NISTEEIQDN  300
LYEANGSIPT GYKVETQQQR GMRRRCLVFE AAGYSNRIVQ KESVMDLSVS TCKGKSPVQN  360
HSNPGKTPSP RVLHGIGLHL NALALTSKDK MVCQDPMSSL VPSSATQQEA HGKMLSAGEN  420
FIHSGGELLE LQMDDDCSAG VFLGNDHDSS QSNSPQKKRR KADNGDDGEA CKRCSCKKSK  480
CLKLYCECFA AGVYCSEPCS CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDAG  540
QDITGEDPNN TPASARHKRG CNCKKSSCLK KYCECYQGGV GCSSNCRCEG CKNTFGKRDA  600
AVSTEAEEMK QGGEEAENCG KEKENDLQKA NVQSEDHPFL ELVPITPPFD VSSSLLKPPN  660
FSSAKPPRPT KARSNSSRSS SKAPGAGHSQ KFTKIANSGL NEEMPDILRD DASPGNCVKT  720
SSPNGKRVSP PHNALSVSPS RKGGRKLILK SIPSFPSLIG DASSGSSMNS SESAFNTASP  780
LALVREKCLT SEARHQWPGL LLHLFPACMC PPNLSLIHVK AKGWLVNCDV CVYVGTWILM  840
SGWAYMSMAA TGPAVMNNSP TNFTSRRSCR RRRRLVVARR REAAVGVAVH RRAVEEGEAL  900
VGRALVGPPG DAVLAVVDAA EAEAPLRLAA EVVVRVGEVP EPRQRADPLR DVSGELVARD  960
VELLQRPHPR HGLRQRPLQL VVADVEHGEP PELPDLRRDA GPHAGVEHDE LVQRRRHPPD  1020
AGGDAPPQLD VGEHDHRRRR VAEVGRELEV EVVVVEEERV DLLVEDRRRD LAAEVVEAEV  1080
DVLDVGEAED VLREAAGEAV VADVELVEEG ELGEGVREGA GEAVGVEVEH GEVGEEAELV  1140
GEGGGEVAVV EVDAGDGGGA RVVRRGGAVD AEVAAHVGAA PPAAWFGGLN WGLVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-20	472	593	12	120	Protein lin-54 homolog
5fd3_B	1e-20	472	593	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	456	460	KKRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538949.1_FGP013

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065897	0.0	AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646690.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0E839	0.0	A0A0E0E839_9ORYZ; Uncharacterized protein
STRING	OMERI07G03420.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6147	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	5e-82	TESMIN/TSO1-like CXC 2