PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538944.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 582aa    MW: 61919.7 Da    PI: 6.6366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538944.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.51.1e-822255813374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L ++A+a + g+   a+++Larl+++  p g+p+ R a+y++ AL   la+      +  +++ ts+ +++ +l+a+k fs++sP+l+f+
  KN538944.1_FGP009 225 DELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALAD-----GHHAATRLTSPLDVALKLTAYKSFSDLSPVLQFA 311
                        7899*************************************************.....6666777888888********************* PP

               GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++ta qa+l+++++   +++ +iDfd++ G+QW+++lq+La R      + p+l++T+++s++s++  el+ t+++L++fA+ lg+pfefn+
  KN538944.1_FGP009 312 NFTATQALLDEIASTtaSCIRVIDFDLGVGGQWASFLQELAHRYgsggVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFATDLGIPFEFNA 403
                        **********999887799************************96544459***************************************** PP

               GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +   +l+++++ eL   + +E++aV+l +              + +++L+lvk+l Pk+vv ++  +d+++ +F ++fl++l+ +  l++sl
  KN538944.1_FGP009 404 I---NLDAFDPMELIAPTaDEVVAVSLPVGCSART--------PLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFLNCLQSCLCLLESL 484
                        9...999999999966557**********877776........5677********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  ++++++ +k+Er+l++++++++v  + ++      ++  Wr  l++aGF p pls+ a++qa++ll++v+++g++ve++ + l l+W+
  KN538944.1_FGP009 485 DAA-GTDADAVSKIERFLIQPRVEDAVLGRRRA-----DKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQ 570
                        999.8999*******************977665.....88899************************************************* PP

               GRAS 364 drpLvsvSaWr 374
                        + +LvsvSaWr
  KN538944.1_FGP009 571 RGELVSVSAWR 581
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.879197561IPR005202Transcription factor GRAS
PfamPF035143.7E-80225581IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MLGDAAAAAG QEQTFLNWIM AAPGDMEPQA PGLSQQQLLA NAAGFGFPLQ HHPGGVSSPA  60
ALASDLSSSG GRSLTSSSGS NSKATSAFGL LSPEAALQPP PATTAPFHNG ADMKPPLLGL  120
PSPTLLLNQH QPTPASTLFM PFPSFSDHQQ QPLLQPPPKR HHSVPDNLFL LHNQPQPPPP  180
APAQCLPFPT LHSTAPFQLQ PSMQHPRNAM KSTAAAAAQQ QHLLDELAAA AKATEVGNSI  240
GAREILARLN QQLPPIGKPF LRSASYLKDA LLLALADGHH AATRLTSPLD VALKLTAYKS  300
FSDLSPVLQF ANFTATQALL DEIASTTASC IRVIDFDLGV GGQWASFLQE LAHRYGSGGV  360
SLPMLKLTAF VSAASHHPLE LHLTQDNLSQ FATDLGIPFE FNAINLDAFD PMELIAPTAD  420
EVVAVSLPVG CSARTPLPAM LQLVKQLAPK IVVAIDYGSD RSDLPFSQHF LNCLQSCLCL  480
LESLDAAGTD ADAVSKIERF LIQPRVEDAV LGRRRADKAI AWRTVLTSAG FAPQPLSNLA  540
EAQADCLLKR VQVRGFHVEK RGAGLALYWQ RGELVSVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-282235814375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538944.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAL6066470.0AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLI1PNQ30.0I1PNQ3_ORYGL; Uncharacterized protein
STRINGORGLA04G0182200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-85GRAS family protein