PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538936.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 812aa    MW: 89830.9 Da    PI: 8.3371
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538936.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.5e-1985140257
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk
  KN538936.1_FGP001  85 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 140
                        6677899************************************************8 PP
2START96.26.3e-3130052425204
                        E...............EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.... CS
              START  25 s...............esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.... 88 
                                        es+n++e+l k  +  +     +++ + r++++v + +++lv++lld + +W e ++    +a t++ is+g    
  KN538936.1_FGP001 300 KengllwlphmdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIISTGpsnl 389
                        3333333344477777999999999998553.3479999**************************.******99999*************** PP

                        ..EEEE....EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCE CS
              START  89 ..galq....lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksngh 161
                          g lq    +m aelq++sp vp  d++f+R++ q g g w +vdvS+d   + ++         ss  +R   ++llpSg++ie+++ng+
  KN538936.1_FGP001 390 hdGLLQlknlQMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTILPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEMENGY 481
                        **655522226899***********************************97666655543222333222233445999************** PP

                        EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                        skvtw+ h+ +++r ++ l++sl++s  a ga +wva lqr+ 
  KN538936.1_FGP001 482 SKVTWMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 524
                        *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-1668123IPR009057Homeodomain-like
SuperFamilySSF466896.68E-1871142IPR009057Homeodomain-like
PROSITE profilePS5007115.74281141IPR001356Homeobox domain
SMARTSM003891.9E-1783145IPR001356Homeobox domain
CDDcd000866.07E-1884140No hitNo description
PfamPF000464.3E-1785140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-4124166IPR009057Homeodomain-like
CDDcd146864.68E-4132169No hitNo description
PROSITE profilePS5084824.236267529IPR002913START domain
CDDcd088752.35E-89271525No hitNo description
SuperFamilySSF559617.14E-18271524No hitNo description
SMARTSM002345.9E-8276526IPR002913START domain
PfamPF018525.6E-24316524IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MPRGFDLDFV EKLKLPSYHA KVMDGELKLM ASYVSKLKFI LQKDQQQEPH TANLLVLLGS  60
SNQDKRNGPS QGENRMDTCT RKKPRRYQLL TMQQKETLNR AFQSCPNPDR NDLKKLAKEL  120
NMTETQIKYW FQNCRTKMKK FKNNEERKLL QKENEELKKE NAELRNRMKN STCRACDLPL  180
FHIDCRHWEN PMLNKGNHGV TSNLIPQAVS SLLPSSSGFV ASGSNLSSNA VLMPVSAMPS  240
SVLQPAPAVS GANFPILHNL SANANDGYTE KNVLLDLANR AMEEFFSLMK ENESLLVKKK  300
ENGLLWLPHM DILGVESLNY QEYLAKSRTI GQKPVDFKVV VTRDTAIVNG SCVDLVKSLL  360
DANRWRELFP GIVASANTTK IISTGPSNLH DGLLQLKNLQ MRAELQVMSP EVPVCDVTFL  420
RQSVQFGSGL WCVVDVSIDT ILPGESKTAQ SSVQTSSTAA RRMEVRLLPS GCVIEEMENG  480
YSKVTWMVHA AYDERAVPVL YHSLLRSAKA LGACRWVASL QRHSQFLSGL HKYIFCPDST  540
MTEVVMRRKV LYLVKQMTSS FTGLFASMSK ATLQDGDDTH FAHQIVGGAT GEPAGLLLSA  600
TTTIWLPGVN PRRVYDHLRD EQCHGEWRCL LGEQLHQGNA LPYGAPLNGE TVPEFYRMVN  660
GLHEGHAISL INPREMGGNI SNTLLLQEAR TDLSGSLIVY ARTDVNTVHS IMNSSLNPAT  720
VFLVSSGCAI LPDCLESFPL HPAATADQAG TSSAAITSRS ETGGSFVTVT YQMFFSSQGG  780
AAPASSSIHQ GRDALKKATD MFKVVLDTLT VA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538936.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004410.0AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650915.10.0homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_015650916.10.0homeobox-leucine zipper protein ROC6-like isoform X1
TrEMBLB8B9A30.0B8B9A3_ORYSI; Uncharacterized protein
STRINGOBART08G09450.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169781212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-87protodermal factor 2