PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538932.1_FGP017
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 460aa    MW: 48079.9 Da    PI: 6.2722
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538932.1_FGP017genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS27.83e-09179232255
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                        ++lL e+A a+++g++e a + La l+  a+++gd  qRl+a+++ AL++r+ +
  KN538932.1_FGP017 179 RQLLSEAAAAIADGHNETAATHLAALKRAANSRGDVEQRLVAMMVAALSSRIGQ 232
                        689************************************************987 PP
2GRAS138.28.3e-43249427132310
               GRAS 132 LasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221
                        La+R+ +  sl++T+v +p+s   ++ +l ++g+ L+k+Ae+ g++ +f++ v+ r  ++e ++L ++ gEalaVnl+++l +++desvs +
  KN538932.1_FGP017 249 LAARRLPGTSLKVTAVTDPASPftQSLTLPAVGDHLQKLAERAGIDYRFKM-VSCRAGEIEASKLGCEAGEALAVNLAFALSHVPDESVSPA 339
                        89999999**********998889**************************9.7999************************************ PP

               GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
                        ++rde+L+ v+ l P+vv +veqe++ n++++ +rf++a+ +y a+++sl+a++pres er+  E++ lg ++ n+va ega+r  r e
  KN538932.1_FGP017 340 NPRDEILRRVRALGPQVVALVEQELNSNTAPLTTRFADACAHYGAILESLDATIPRESAERARAEAA-LGGRAANAVAREGADRLGRGE 427
                        ******************************************************************9.9999************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.2268460IPR005202Transcription factor GRAS
PfamPF035141.0E-6179232IPR005202Transcription factor GRAS
PfamPF035142.9E-40249427IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEPGAPWRDP RQGYLYGVGS AVQMPMQQRS DAAAAGGVLK RSLGDMERWQ QHQQQQRQIA  60
MQQQLYLRTV QAFGTARALP PAPATSDLSI LQELEKQLLG DDDEVEAAMS GTGSAVTGSE  120
WEEQLNSITA APSPPLTAAT TPNNNNNAVG MTRSPSNSST STASSSASCS PPTSATTSRQ  180
LLSEAAAAIA DGHNETAATH LAALKRAANS RGDVEQRLVA MMVAALSSRI GQTASVPDIC  240
GGETRAGCLA ARRLPGTSLK VTAVTDPASP FTQSLTLPAV GDHLQKLAER AGIDYRFKMV  300
SCRAGEIEAS KLGCEAGEAL AVNLAFALSH VPDESVSPAN PRDEILRRVR ALGPQVVALV  360
EQELNSNTAP LTTRFADACA HYGAILESLD ATIPRESAER ARAEAALGGR AANAVAREGA  420
DRLGRGEGGP VAAGFAVKAE NGVLRLGWMG RVVTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-18257428140310GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538932.1_FGP017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066880.0AL606688.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637100.10.0scarecrow-like protein 8
TrEMBLA0A0E0DHK40.0A0A0E0DHK4_9ORYZ; Uncharacterized protein
STRINGOMERI04G18310.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-46SCARECROW-like 8