PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538930.1_FGP009

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 609aa MW: 70930 Da PI: 8.6242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538930.1_FGP009	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.9	2e-29	42	129	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA++vGFsvr+sks++s+++++i++r+fvCskeg++++++++t k++r+ra r gC+a+++v++++ +w+v+kl +eHnH++ KN538930.1_FGP009 42 FYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHHKKQTDTGKRKRKRAIIREGCHAMIEVSQKYYRRWVVIKLIKEHNHAV 129 9*************************************************************************************97 PP
2	FAR1	78.5	1.3e-24	163	250	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+vr++ s++s +++++++r+fvC++eg + e+++ ++++r+r + r gC+a++++ k++++kw+v+kl l H+Hela KN538930.1_FGP009 163 FYYAYASRMGFDVRIRLSRRSPKDETFVMRRFVCTREGATPCEENE-NRRKRNRGVPREGCQAMFEIVKKDQDKWVVSKLFLAHTHELA 250 9**************************************99999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-26	42	129	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.9E-21	163	250	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	9.2E-8	492	530	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.324	493	531	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-6	506	533	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MMAFDVNSEP VDMNNTSSKA NLENSEPFVG MEFESEEAAK VFYMAYASRV GFSVRISKSR 60 RSRNDESIIM RRFVCSKEGF HHKKQTDTGK RKRKRAIIRE GCHAMIEVSQ KYYRRWVVIK 120 LIKEHNHAVA APSIVRYVAP EEYAQLEPLA GMEFPSYESA QTFYYAYASR MGFDVRIRLS 180 RRSPKDETFV MRRFVCTREG ATPCEENENR RKRNRGVPRE GCQAMFEIVK KDQDKWVVSK 240 LFLAHTHELA NVPNKVHYIQ SNSENWIAAM GSHHPTSLTT VYNEAIGSAI AKIFPQTHHL 300 YFTADILKRS KDILADIYFR HVSFEREFYV CINEPETIEM FELSWKKVLD KYDLYDNSWL 360 QSLYRIRQKW VPVYFKGVFT ADLSASQRPE SLRNIFEKYF NRRTALPVFI SLFEHLMAGW 420 SEREAVEDLA TSFTRPVLRT PSNMMKQVSE IYTTTVFNIL EEEFIGSLGY YISSLDNDGL 480 IAVYSVTKED TEATCRVRYD TSGNIAKCSC CKFESCGILC RHILRVFLAL DVRTIPDVYI 540 LKRWTKEAKN GFVLDECLRY SELHRDALRY AREGSTSGEV FTFAQQTLQV AFAEVVQMKQ 600 ETFSQYTIR

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MMAFDVNSEP VDMNNTSSKA NLENSEPFVG MEFESEEAAK VFYMAYASRV GFSVRISKSR  60
RSRNDESIIM RRFVCSKEGF HHKKQTDTGK RKRKRAIIRE GCHAMIEVSQ KYYRRWVVIK  120
LIKEHNHAVA APSIVRYVAP EEYAQLEPLA GMEFPSYESA QTFYYAYASR MGFDVRIRLS  180
RRSPKDETFV MRRFVCTREG ATPCEENENR RKRNRGVPRE GCQAMFEIVK KDQDKWVVSK  240
LFLAHTHELA NVPNKVHYIQ SNSENWIAAM GSHHPTSLTT VYNEAIGSAI AKIFPQTHHL  300
YFTADILKRS KDILADIYFR HVSFEREFYV CINEPETIEM FELSWKKVLD KYDLYDNSWL  360
QSLYRIRQKW VPVYFKGVFT ADLSASQRPE SLRNIFEKYF NRRTALPVFI SLFEHLMAGW  420
SEREAVEDLA TSFTRPVLRT PSNMMKQVSE IYTTTVFNIL EEEFIGSLGY YISSLDNDGL  480
IAVYSVTKED TEATCRVRYD TSGNIAKCSC CKFESCGILC RHILRVFLAL DVRTIPDVYI  540
LKRWTKEAKN GFVLDECLRY SELHRDALRY AREGSTSGEV FTFAQQTLQV AFAEVVQMKQ  600
ETFSQYTIR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538930.1_FGP009

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC091532	0.0	AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632988.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632989.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632990.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632991.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B8AQP2	0.0	B8AQP2_ORYSI; Uncharacterized protein
TrEMBL	B9FB80	0.0	B9FB80_ORYSJ; Uncharacterized protein
TrEMBL	Q10DV6	0.0	Q10DV6_ORYSJ; Transposon protein, putative, unclassified, expressed
STRING	OB03G39100.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-98	FAR1-related sequence 5