PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538929.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 1396aa    MW: 152909 Da    PI: 9.1524
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538929.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox215.6e-0774130157
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        +++R  ++++ ++ +++lF+++ ++ ++e +e++++ g+t +qV+ +F  +R++ +k
  KN538929.1_FGP008  74 KKPRDLLNPKAVKSMQSLFAMKDTIGKKETREISASFGVTVTQVREFFASQRTRVRK 130
                        799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.71871131IPR001356Homeobox domain
SMARTSM003890.002873135IPR001356Homeobox domain
SuperFamilySSF466891.03E-574133IPR009057Homeodomain-like
CDDcd000864.17E-474130No hitNo description
Gene3DG3DSA:1.10.10.606.2E-574137IPR009057Homeodomain-like
PfamPF000461.8E-474130IPR001356Homeobox domain
Gene3DG3DSA:3.40.1000.109.6E-4412171392IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
SuperFamilySSF557241.15E-2712171225IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
SuperFamilySSF557241.15E-2712551392IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
PfamPF017896.8E-2512681391IPR002683PsbP family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0015979Biological Processphotosynthesis
GO:0005634Cellular Componentnucleus
GO:0009654Cellular Componentphotosystem II oxygen evolving complex
GO:0019898Cellular Componentextrinsic component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1396 aa     Download sequence    Send to blast
MELVPFKPEA GALVESGGGA HGDSIPAMVA AQQELLHAQV DQLQLLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF  120
FASQRTRVRK FVRLSREKAL RIESSKAPDI VCSISTEQTP VDIEAHAQVI EPLRTLEPLE  180
AQQISLPHLV VPQISLQLPV VPQSCAIPVA PTGVMQPTEA KTNPDPIQKE TKQEEVAGVE  240
SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT  300
EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSKAR NLLSRLSKVL  360
VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA LTDDASESRM PEPRKTPLLL  420
TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA  480
KMRAMFMQEK YGKVDTSKVT EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS  540
TSKQSTLSPP DKPEIAVSSK LNVTAKENFI EKLDSKRVIW QIPPAWNKHP AIKLLEEQGM  600
AIFCSDMRIE KLPVIPHKQT WGSYYHNFRQ FIATVPLFVG RLAKVWIDPA WSLGAGENSK  660
EFEVQTQRNR REKETFYASL KDIPLNPKGP WDVEMDFDDS LTPEIPIEQP PDADAMETDS  720
VSTAPPNIVV PVVDKQIGST SSVSPAVAAG ANGAASEPDL ELLAVLLKNP QLVFALTSNQ  780
GGTLPSEQTV ALLDMLKQTG LGLSELVNSL ANNSGVQKEP ESGPEAIPAS LPSPTPPKDL  840
IARDGWSSEF PSQVRTQNLQ HAHLPNRANA PPVASSVQQS FSNVVSSLPS QPYASASALP  900
AQTRTNMTSL PQSMISVNPS TQHVAPMNNL LSRATVHQHT QSYTLTSDPV AVAVHHQPAV  960
NKLAHEVQSI SHPAVSHSSV AESHASYTSY TWQSSVATIA ATGRNATPDR WAAPARTTNS  1020
FNAAPSNSNP VTYPNQNAYS NHSTQATTYN SYGSAPVSSH SLHPGQGLDR NGYTHAAEYQ  1080
TTTARDALRR NSRSPELGAG AVYGSSSQGY VPEPSRQWNY GQQSYNPEPS SRQWSSGQQS  1140
YNTVTAEPSR QWSSGQQSYS NPAEPSRQWS SSAHAQPSYN PEPSRPWNSG HQSQNPEASR  1200
QWSHHHGKQE RYNPTDEFIY PASWVGDQTL LYRGAKRAEL QRSLDPPPLA NGRSPSRPRN  1260
ISEPVAAFGP PGSSGELNVS VIVSPVPQDF SIEAFGGPKD VGEVVLRRIA KTKRGADINA  1320
TLLDAALRED PANNVKYYKL EFRVESPSFR RRNVAVCCAK DGKLYTLNAQ APESAWKAVR  1380
KEFLAMADSF SLVADV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538929.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0726400.0AK072640.1 Oryza sativa Japonica Group cDNA clone:J023133P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620702.10.0homeobox protein LUMINIDEPENDENS
TrEMBLA2WYS30.0A2WYS3_ORYSI; Uncharacterized protein
STRINGORUFI01G46480.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80433034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-104HB-other family protein