PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538923.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20098 Da PI: 9.6542 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.9 | 2.2e-17 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i n r v fskRr+ ++KKA+ELS+LC+++vav ++s+ gk KN538923.1_FGP001 9 KPIANRKARDVCFSKRRQVVIKKANELSILCGVNVAVAVLSPAGK 53 6899**************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.31E-21 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.983 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.75E-22 | 2 | 58 | No hit | No description |
PRINTS | PR00404 | 2.4E-14 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-19 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-14 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-14 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MRRGKVKIKP IANRKARDVC FSKRRQVVIK KANELSILCG VNVAVAVLSP AGKPFFFGCP 60 TVQAVTRRLL GVGPSNPTMG DGGNGDETDI VHELNLKYQK LQQENEVEKK KNQRGQDVRL 120 ASDVNALGLH ELEAFDSNLN VIDDIVDSND VVKNAKQTAE PQTQMSVAST LQFMLNGQSI 180 APSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538923.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004458 | 0.0 | AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08. | |||
GenBank | AP005819 | 0.0 | AP005819.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0063H21. | |||
GenBank | AP009079 | 0.0 | AP009079.1 Oryza sativa Indica Group DNA, chromosome 8, BAC clone: K0031E03. | |||
GenBank | AP009081 | 0.0 | AP009081.1 Oryza sativa Indica Group DNA, chromosome 8, BAC clone: K0048F05. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY360394 | 0.0 | AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q6UTZ6 | 1e-131 | Q6UTZ6_ORYSJ; Putative transcription factor | ||||
STRING | ORUFI08G11050.3 | 1e-130 | (Oryza rufipogon) | ||||
STRING | ONIVA04G01430.1 | 1e-130 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23101 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 7e-20 | AGAMOUS-like 29 |