PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538920.1_FGP024
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 534aa    MW: 59294.6 Da    PI: 4.4816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538920.1_FGP024genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.3e-1134109348
                        SS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrwqkyl 48 
                        +W++eEd+ l   ++++G++                               +W+ Ia+ +   +t+ qc+ rw++yl
  KN538920.1_FGP024  34 SWSAEEDDVLRTQIALHGTDkyeffplpisidfffldlitifytvfpfpfgSWTIIAAQFK-DKTARQCRRRWYNYL 109
                        6***********************************************************9.**************7 PP
2Myb_DNA-binding22.42.9e-071591881546
                        HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  15 avkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  KN538920.1_FGP024 159 AQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 188
                        56678888.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.627113IPR017930Myb domain
SMARTSM007171.9E-631111IPR001005SANT/Myb domain
CDDcd001678.36E-734109No hitNo description
Gene3DG3DSA:1.10.10.607.5E-163554IPR009057Homeodomain-like
PfamPF139211.2E-1035125No hitNo description
SuperFamilySSF466896.68E-1777113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-1686116IPR009057Homeodomain-like
SMARTSM007171.2E-5114192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-16117193IPR009057Homeodomain-like
CDDcd001673.71E-4118189No hitNo description
PROSITE profilePS512948.111143194IPR017930Myb domain
SuperFamilySSF466896.68E-17162191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MATGPDLTPP AAAAAASAEA PSASAAKKDR HIVSWSAEED DVLRTQIALH GTDKYEFFPL  60
PISIDFFFLD LITIFYTVFP FPFGSWTIIA AQFKDKTARQ CRRRWYNYLN SECKKGGWSR  120
EEDLLLCEIS ELANMRSVTS SVRQQARHIA MTMELSVYAQ KVLGNKWTEI AKVVSGRTDN  180
AVKNRFSTLC KRRAKDDELF KENGSLCSSA SAKRALAQTE CLTSALITAM CIIAGVKHEG  240
NFLNKDDPKI VTLLQRADLL CSLATKINTE NTSQSMDEAW QQLQHHLDKK DDNDMSESSM  300
SGMASLLEDL DDLIVDPYEN EEEEDQNLRE QNEQIDMENK QNSSQTSMEV TSQMVPDNKM  360
EDCPNDKSTE DNNMEPCPGE DIPTSENLTE AAIEDSLLQC VEYSSPVHTV IQAKTDAEIA  420
ASENLSEVLE HNRLQCIKLA SPAQTTTPVE ANAETPASEK LSEVVKCKNP PCMGFTSPAH  480
TVPTFLPYAD DMPTPKFTAS ERNFLLSVLE LTSPGSRPDT SQQPSCKRAL LNSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538920.1_FGP024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634260.0AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882808.10.0transcription factor MYB124 isoform X1
TrEMBLA0A0E0AMZ90.0A0A0E0AMZ9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I4C60.0A0A0E0I4C6_ORYNI; Uncharacterized protein
STRINGOGLUM07G22980.20.0(Oryza glumipatula)
STRINGONIVA07G22540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.23e-65MYB family protein