PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538920.1_FGP018

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 265aa MW: 29716.3 Da PI: 7.0193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538920.1_FGP018	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.8	2.5e-05	36	76	1	45
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 +r ++erE+ Rd+ N+ f+eL ll ++ + + Ka +L KN538920.1_FGP018 36 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVLG 76 68899**********************996....34455555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-11	32	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-8	32	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.153	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MVPRDRVNAA AAGGGGEGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN 60 LLEPDRQNNG KACVLGETTR ILKDLLSQVE SLRKENSSLK NESHYVALER NELHDDNSML 120 RTEILELQNE LRTWMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQL 180 PVIIEQHYAA TPRELQLFPE SATSEDSEPS QEHGISDHVT RPQPRYPTPT ATLPVNLFPV 240 FPGRQDQQCS SGTSGTNEED RIGRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538920.1_FGP018

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070963	0.0	AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645391.1	0.0	transcription factor BHLH062-like
Refseq	XP_015645393.1	0.0	transcription factor BHLH062-like
Swissprot	Q69V10	0.0	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A0E0AN12	0.0	A0A0E0AN12_9ORYZ; Uncharacterized protein
TrEMBL	B8B4W8	0.0	B8B4W8_ORYSI; Uncharacterized protein
STRING	OS07T0628500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-35	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]