PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538915.1_FGP015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23448.9 Da PI: 10.1197 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.5 | 2.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+EL +LCdae+a+i+fss+g+lye+s+ KN538915.1_FGP015 9 KRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSN 59 79***********************************************95 PP | |||||||
2 | K-box | 104.8 | 1.1e-34 | 84 | 173 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + +++ qqe+ak++ +i++Lq+ +Rhl+Ge++++ + keL++Le++Lek++++iRskK+ell+++ie++qk+e +lq+en Lr+k+ KN538915.1_FGP015 84 IDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNVTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENIFLRAKV 173 566889*********************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.305 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-31 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.20E-41 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 6.9E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.4E-28 | 86 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.372 | 89 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGRGKIEIKR IENKTSRQVT FCKRRNGLLK KAYELAILCD AEIALIVFSS RGRLYEFSNV 60 NSTRSTIERY KKASASTSGS APVIDVNSHQ YFQQEAAKMR HQIQTLQNAN RHLIGESIGN 120 VTAKELKSLE NRLEKGISRI RSKKHELLFS EIEYMQKREA DLQNENIFLR AKVYTDKFKG 180 SCDLLYLQIF HDFSKGLEEI KEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-19 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538915.1_FGP015 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070958 | 0.0 | AK070958.1 Oryza sativa Japonica Group cDNA clone:J023065L09, full insert sequence. | |||
GenBank | AY551913 | 0.0 | AY551913.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS207 mRNA, complete cds. | |||
GenBank | FJ750944 | 0.0 | FJ750944.1 Oryza sativa clone KCS020C02 MADS-box transcription factor 21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621182.1 | 1e-122 | MADS-box transcription factor 21 | ||||
Swissprot | Q8RU31 | 1e-123 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | A0A0D9YIC9 | 1e-120 | A0A0D9YIC9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G43970.1 | 1e-121 | (Oryza glumipatula) | ||||
STRING | OMERI01G36080.1 | 1e-121 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.1 | 2e-85 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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