PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538910.1_FGP016
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 260aa    MW: 28390.2 Da    PI: 11.2318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538910.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-141963347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  KN538910.1_FGP016 19 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 63
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5681268IPR017930Myb domain
SuperFamilySSF466891.0E-171368IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-171566IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-121662IPR009057Homeodomain-like
SMARTSM007175.8E-131666IPR001005SANT/Myb domain
PfamPF002495.5E-121963IPR001005SANT/Myb domain
CDDcd001671.78E-111964No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVGGKRARGP DQERKKGVPW TEEEHKLFLM GLKKYGRGDW RNISRNFVTS RTPTQVASHA  60
QKYFIRLNSG GKDKRRSSIH DITTVNLPDD DHGNPSPSPP PSVLTAHSSS SAAAVSEQFG  120
VLVDGKPPPP PPLGRGAGHH HFMPHPYAQP TETPMEGNNG APHHHKKGGH GKTVFAAVAG  180
FHLAQHLQLA PGCLHAQIHP QGKCHWWLTA RHRGKRREGN RRQLRWLPLG ASLGLAQRPC  240
ASVKKRGDAS LERVNKGGAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538910.1_FGP016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681380.0AK068138.1 Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637475.11e-84transcription factor DIVARICATA
TrEMBLA0A0E0A0171e-101A0A0E0A017_9ORYZ; Uncharacterized protein
STRINGOGLUM05G19710.11e-102(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.18e-48MYB family protein