PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538901.1_FGP028 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 736aa MW: 83470.9 Da PI: 8.1372 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.7 | 5.2e-111 | 355 | 728 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lL++cA+av++++ a++l++++++++spdgd++qRla+y++ +L+arla+ +s++y++l +s+ts ++ l+a++l+ ++P+ + KN538901.1_FGP028 355 LRNLLIHCAQAVAADNRISASELVKKIRQHSSPDGDSNQRLAFYLVDGLEARLAGIGSQVYRKLMASRTS---AESLLKAYSLYLSACPFER 443 689*************************************************************999998...89999************** PP GRAS 93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 s+ aN++Il+a +g+ ++vHi+ f+i G+QWp+L+q La+ ++gpp+lRiTg++ p++g e +eetg+rLa++A+ ++vpf+++ KN538901.1_FGP028 444 ASFAYANRTILDASKGQqpRKVHIVHFGICAGFQWPSLIQRLANEEGGPPKLRITGIDMPQPGfhPCEIIEETGKRLADYANLFKVPFQYQG 535 *****************999******************************************9999999*********************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a+r+e++++e+L+++++E+l+Vn+++++++l de vs++s+rd+vLk+++ ++P+v+++ + +++s+ F +rf e l ++s+lfd+++ KN538901.1_FGP028 536 -IASRWETVQIEDLNIDKDEVLIVNCMFRMKNLGDEMVSMNSARDRVLKIMRMMNPRVFILGIVNGSYSSPFFITRFKEVLFHFSSLFDMID 626 .7****************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 a++pr++e+r+++Er l+g+e+ n++acegaer+er e++++W++r +aGFk++p++ ++ k++ + + ++ + + +e+ g+l++gWk+ KN538901.1_FGP028 627 ANVPRDNEARKMIERGLFGQEALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPDTLKKIINMKKGIYHEDFVADEDGGWLLQGWKG 718 *************************************************************************999**************** PP GRAS 365 rpLvsvSaWr 374 r ++++S W+ KN538901.1_FGP028 719 RVIYAISTWK 728 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.501 | 329 | 708 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-108 | 355 | 728 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
MVIELPFDNQ YTTTETEQPH DGSSCSSQQQ LSLYNYSPSD PQLFSQPTTG SRTYLSGAVT 60 IPGICNDKSN LGQPQFQIGA GVSLEYQRIR SSDALCYISR MLMEDVDERV DLYQGEAALQ 120 AAEKPFYDIL GQVYPPSLNR LELHSANEPD TPDESSSRNN YHNRYHSSHS NFNMLQPSPA 180 PLSPYSYGRS LFLPNQNLVS TAWTSTFGIP GFQIRRGAEE AKRFVPIIDK LVIDLDTERG 240 LSISKMTMKA KVGDKKRYAI FEVTDQRHSP YTTDLDILEG RNSKRYSITY CEIIRNDMFD 300 RVLLCYGVEN FAEASNLRRI MMKQASKNSL NGQTRGSAQQ KLRGKKQLKK DVVDLRNLLI 360 HCAQAVAADN RISASELVKK IRQHSSPDGD SNQRLAFYLV DGLEARLAGI GSQVYRKLMA 420 SRTSAESLLK AYSLYLSACP FERASFAYAN RTILDASKGQ QPRKVHIVHF GICAGFQWPS 480 LIQRLANEEG GPPKLRITGI DMPQPGFHPC EIIEETGKRL ADYANLFKVP FQYQGIASRW 540 ETVQIEDLNI DKDEVLIVNC MFRMKNLGDE MVSMNSARDR VLKIMRMMNP RVFILGIVNG 600 SYSSPFFITR FKEVLFHFSS LFDMIDANVP RDNEARKMIE RGLFGQEALN IIACEGAERT 660 ERPESYKQWQ ARCLKAGFKQ LPVDPDTLKK IINMKKGIYH EDFVADEDGG WLLQGWKGRV 720 IYAISTWKPN ESYLDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-49 | 359 | 728 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538901.1_FGP028 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693385.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9 | ||||
TrEMBL | B8AWY4 | 0.0 | B8AWY4_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA05G00700.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-161 | GRAS family protein |