PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538901.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 626aa MW: 71459.2 Da PI: 6.7912 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 369 | 6.1e-113 | 256 | 623 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lL++cA+a++s+++ a++lL +++++a pdgd qRla +f+ +L+arla+++s++y++l +++ts + + l+a++l++ ++P+ +++ KN538901.1_FGP001 256 LLIQCAQAIASNNHPFASELLRKIRHHALPDGDGSQRLANCFADGLEARLAGTGSQMYEKLMAKQTS---TRDMLKAYHLYFVACPFEMVTY 344 8****************************************************************99...899******************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 N++I +a+eg++++Hi+Df+i G+QWp+L+q La+R++gpp+lRiTgv+ p++g +e++eetg+rLa++A+ ++vpf+++ +a+r KN538901.1_FGP001 345 YFSNKTIIDALEGKTTLHIVDFGIVFGFQWPCLIQRLAKREGGPPKLRITGVDVPQPGfrPRERIEETGKRLAEYANMFNVPFQYHG-IASR 435 *********************************************************9*****************************.7*** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +e++ +e+L+++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+++ + ++s+ Fl+rf e l +ys+lfd+l++++pr KN538901.1_FGP001 436 WETICIEDLSIDKDEVLIINCMSRMRKLGDETENIDSARDRVLHMMKRMNPQVFILGVVNGLYSSPFFLTRFREVLFHYSSLFDMLDNNVPR 527 ******************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 ++e+ri vE+ l+g+++ n+vacegaer+er e++++W++r+ +aGFk+ p+++ + + + + +++d + ++e+sg+l++gWk+r + + KN538901.1_FGP001 528 NHEARILVEKDLFGNDALNAVACEGAERIERPESYKQWQMRILKAGFKQRPVNQAILNRSVHYKELYHED-FVIDEDSGWLLQGWKGRIIQA 618 ******************************************************9999999999999955.********************* PP GRAS 370 vSaWr 374 +S W+ KN538901.1_FGP001 619 LSTWK 623 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.978 | 227 | 604 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-110 | 256 | 623 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MDSPEYCQAN SNITLDYING ILMEEDIDDK ISIKKGQDAL QATEKPFYDI LGKAYPSSSK 60 ETAINGDSRA DYPDNGISSY HEQACSGSFV SDLLGSQDAH SITTDWSSEF DRLALQFRRG 120 VEEAKRFIPN IEKLVDDPEK NGLYACKQTT ETTEQKGKHE NKIRNHPHVE DIELMEARNS 180 KHMAISTIET IRDEMFDSIL LCNRQLPGEV ANLRGKMAKE ASDNPKKFQS KGYGKGQRKP 240 HSSKKKQKEA IDLSVLLIQC AQAIASNNHP FASELLRKIR HHALPDGDGS QRLANCFADG 300 LEARLAGTGS QMYEKLMAKQ TSTRDMLKAY HLYFVACPFE MVTYYFSNKT IIDALEGKTT 360 LHIVDFGIVF GFQWPCLIQR LAKREGGPPK LRITGVDVPQ PGFRPRERIE ETGKRLAEYA 420 NMFNVPFQYH GIASRWETIC IEDLSIDKDE VLIINCMSRM RKLGDETENI DSARDRVLHM 480 MKRMNPQVFI LGVVNGLYSS PFFLTRFREV LFHYSSLFDM LDNNVPRNHE ARILVEKDLF 540 GNDALNAVAC EGAERIERPE SYKQWQMRIL KAGFKQRPVN QAILNRSVHY KELYHEDFVI 600 DEDSGWLLQG WKGRIIQALS TWKVET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-47 | 257 | 623 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538901.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079022 | 0.0 | AC079022.2 Oryza sativa chromosome 5 clone P0574H01, complete sequence. | |||
GenBank | AC079356 | 0.0 | AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881341.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | I1PRT1 | 0.0 | I1PRT1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0007900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-171 | GRAS family protein |