PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538894.1_FGP017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 184aa MW: 19847 Da PI: 5.1476 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.8e-07 | 65 | 98 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 +g+WT++Ed +lv v++lG ++W+ a+ g R KN538894.1_FGP017 65 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSG-LR 98 79***********************9999888.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 30 | No hit | No description |
PROSITE profile | PS50090 | 6.307 | 63 | 98 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 7.02E-6 | 63 | 94 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-6 | 64 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-4 | 67 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MVVAGKKQQG RSSSMHSFSS SSSSSSSSSC SVVQLGHHQR PQGEDPLIGI KAAAAGGGGG 60 GIMRKGPWTE QEDVQLVWFV RLLGERRWDF LAKVSGLRGG GNLQQQPQPA PAEDESSASG 120 SLQAQHHEDQ HQLFLHPLWN DDIIVDVDCW SSSTNVVAPP PMPASPLWDI DDAFFSDYSL 180 PLWG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538894.1_FGP017 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066180 | 1e-123 | AK066180.1 Oryza sativa Japonica Group cDNA clone:J013058H19, full insert sequence. | |||
GenBank | AP003627 | 1e-123 | AP003627.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0459B04. | |||
GenBank | AP014957 | 1e-123 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY569615 | 1e-123 | AY569615.1 Oryza sativa (japonica cultivar-group) MYB transcription factor (Myb) precursor RNA, complete cds. | |||
GenBank | CP012609 | 1e-123 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621159.1 | 6e-46 | transcription factor MYB59 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37765 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 7e-13 | myb domain protein 48 |