PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538889.1_FGP014
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 447aa    MW: 48603.2 Da    PI: 5.1035
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538889.1_FGP014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88e-074485540
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        C+ ++e++   +C+++   lC +C  + H+       Ht++
  KN538889.1_FGP014 44 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 85
                       7*****************************657888888876 PP
2zf-B_box223.4e-0787129541
           zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                         C+++  +++   C + ++ lC++C  ++H g       H++++
  KN538889.1_FGP014  87 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 129
                        7*****************************.5588889998876 PP
3CCT64.33.7e-22390433144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  KN538889.1_FGP014 390 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 433
                        899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9544087IPR000315B-box-type zinc finger
SMARTSM003362.9E-124087IPR000315B-box-type zinc finger
CDDcd000211.12E-74487No hitNo description
PROSITE profilePS501199.05883130IPR000315B-box-type zinc finger
CDDcd000219.72E-687130No hitNo description
SMARTSM003360.2488130IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408390432IPR010402CCT domain
PfamPF062038.0E-17390432IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MRLQYPGRIP LNSTVEQKAR KVAVLVALNA SGSAPVLYRT MDALCDFCGE QRSMVYCRSD  60
AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC LEENTSLCQN CDWNGHGAAS  120
SAAGHKRQTI NCYSGCPSSA ELSRIWSFSM DIPTVAAEPN CEEGINMMSI NDNDVNNHCG  180
APEDGRLLDI ASTALMSDLP TGDKFKPLIG SSSGDGMNLL PLNSDQPAEP VSTTPKAPCV  240
TDKDMFNDGS VYEDFCVDDA DLTFENYEEL FGTSHVQTEQ LFDDAGIDSY FEMKDVPADE  300
SNEQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA ISNISLSFSG LTGESSAGDF  360
QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK KKRRKFDKKI RYASRKARAD  420
VRKRVKGRFV KAGEAYDYDP LSQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399403KKKRR
2399404KKKRRK
3400404KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538889.1_FGP014
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018880.0AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574.
GenBankAK0716300.0AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D3F9W40.0A0A0D3F9W4_9ORYZ; Uncharacterized protein
TrEMBLI1P3S10.0I1P3S1_ORYGL; Uncharacterized protein
STRINGORGLA02G0262700.10.0(Oryza glaberrima)
STRINGOBART02G30740.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-94CONSTANS-like 9