PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538887.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 277aa    MW: 29456.6 Da    PI: 8.9422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538887.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.71e-22193232241
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkvers 41 
                        +DgynWrKYGqK+vkgse+prsYY+Ct++gC++kkk   +
  KN538887.1_FGP007 193 EDGYNWRKYGQKQVKGSENPRSYYKCTYNGCSMKKKATAT 232
                        8**********************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.544187227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-19190237IPR003657WRKY domain
SuperFamilySSF1182904.71E-18191240IPR003657WRKY domain
SMARTSM007742.4E-19192247IPR003657WRKY domain
PfamPF031068.6E-17193231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASSTGGLDH GFTFTPPPFI TSFTELLSGG GGDLLGAGGE ERSPRGFSRG GARVGGGVPK  60
FKSAQPPSLP LSPPPVSPSS YFAIPPGLSP TELLDSPVLL SSSHILASPT TGAIPAQRYD  120
WKASADLIAS QQDDSRGDFS FHTNSDAMAA QPASFPSFRD QEQEQQVVES SKNGGAAASS  180
NKSGGGGGNN KLEDGYNWRK YGQKQVKGSE NPRSYYKCTY NGCSMKKKAT ATWATPETVH  240
AYTPHLGYAY LHQMAQWMER PSGKVAGVKW EHARDKH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538887.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1904360.0AB190436.1 Oryza sativa Japonica Group OsWRKY53 mRNA for transcription factor OsWRKY53, complete cds.
GenBankAY6769290.0AY676929.1 Oryza sativa (indica cultivar-group) transcription factor WRKY53 (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640378.11e-119probable WRKY transcription factor 26 isoform X2
TrEMBLA0A0E0HD161e-118A0A0E0HD16_ORYNI; Uncharacterized protein
STRINGONIVA05G13190.11e-119(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.12e-29WRKY DNA-binding protein 26