PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538883.1_FGP032
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 181aa    MW: 20243.5 Da    PI: 9.6039
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538883.1_FGP032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.6e-082571347
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       +W++ Ed+ +  a   ++ +   +W+++a++++ gR++ ++ ++++ +
  KN538883.1_FGP032 25 PWSKAEDKVFESALVAFPEHthnRWALVASRLP-GRSAHEVWEHYRVL 71
                       8***************9999999**********.***********976 PP
2Myb_DNA-binding45.32e-14113157347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qk+
  KN538883.1_FGP032 113 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 157
                        8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-72274IPR001005SANT/Myb domain
SuperFamilySSF466895.52E-122479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-72469IPR009057Homeodomain-like
PfamPF002494.3E-72571IPR001005SANT/Myb domain
CDDcd001672.27E-62572No hitNo description
PROSITE profilePS500906.9342572IPR017877Myb-like domain
PROSITE profilePS5129419.617106162IPR017930Myb domain
SuperFamilySSF466895.18E-18108162IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-16110161IPR006447Myb domain, plants
SMARTSM007172.8E-10110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-11112153IPR009057Homeodomain-like
CDDcd001671.89E-10113158No hitNo description
PfamPF002498.0E-11113156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAFYGGEMGG SSSSWVAPLV PSSRPWSKAE DKVFESALVA FPEHTHNRWA LVASRLPGRS  60
AHEVWEHYRV LVDDVDLIER GMVASPGCWD DGAGRGGAQG ASRGGDERRR GVPWTEEEHR  120
LFLEGLEKYG RGDWRNISRW SVKTRTPTQV ASHAQKFFIR QANASNRSDS KRKSIHDITA  180
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-132292777RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538883.1_FGP032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638220.11e-110transcription factor DIVARICATA
SwissprotQ8S9H72e-49DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0E0PN441e-128A0A0E0PN44_ORYRU; Uncharacterized protein
TrEMBLA2Y5541e-128A2Y554_ORYSI; Uncharacterized protein
STRINGORUFI05G19330.11e-128(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-46MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]