PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538883.1_FGP024

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 568aa MW: 62277.1 Da PI: 6.7884

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538883.1_FGP024	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.3e-11	204	233	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ KN538883.1_FGP024 204 AKTERRLAQNREAARKSRLRKKAYVQQLET 233 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	201	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	203	247	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	204	234	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.9E-7	205	234	No hit	No description
CDD	cd14708	1.15E-21	205	257	No hit	No description
SuperFamily	SSF57959	1.61E-6	205	248	No hit	No description
PROSITE pattern	PS00036	0	208	223	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.7E-29	286	360	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MVQALILICL PLTSEAHTLS ACLYIPEKFS FYLFVHILHM AIGYHRELQP AAAAYFGELE 60 KALIHGTSAG AGVDHVMIQS DAYTESAGYL AARPPTLEIF PSWPMSHLQE PYSQNSQSVG 120 STTDSSSAQN TMSQAELVSP ASMRSDSGQE QQQQEVLMVT IDDYNYKQGL GAAIATAPSF 180 QQHAGGLDMR KHGSTRKDGK LLDAKTERRL AQNREAARKS RLRKKAYVQQ LETSRIRLQQ 240 IEQELQRARS QGLFPGGCSA PGDMSSGAVM FDMEYTRWID DDSKCMAELQ GALQAQLPDG 300 NLGAIVEECM RHYDELFHLR AVLASSDVFH LMTGMWAAPA ERCFLWMAGF RPSEILKMLI 360 PQLDPLTEQQ LMGMCSLQQS SEQTEEALAQ GLHQLHQSLA DAVGGGPLND GADVANYTGL 420 MALALGRLEN LESFYRQSII AVSVLSAPSG LHVLAKTSLR PRMSALQELN FRLFSNLSKI 480 NSPGSETSSP GGYKFCISAS SKPKPKSLWI GPTDLPRRLG LEVLGLDDGP AGVVVSGRRR 540 RLLSCLIRLR LIDSSWPAAF SPTKVWSL

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MVQALILICL PLTSEAHTLS ACLYIPEKFS FYLFVHILHM AIGYHRELQP AAAAYFGELE  60
KALIHGTSAG AGVDHVMIQS DAYTESAGYL AARPPTLEIF PSWPMSHLQE PYSQNSQSVG  120
STTDSSSAQN TMSQAELVSP ASMRSDSGQE QQQQEVLMVT IDDYNYKQGL GAAIATAPSF  180
QQHAGGLDMR KHGSTRKDGK LLDAKTERRL AQNREAARKS RLRKKAYVQQ LETSRIRLQQ  240
IEQELQRARS QGLFPGGCSA PGDMSSGAVM FDMEYTRWID DDSKCMAELQ GALQAQLPDG  300
NLGAIVEECM RHYDELFHLR AVLASSDVFH LMTGMWAAPA ERCFLWMAGF RPSEILKMLI  360
PQLDPLTEQQ LMGMCSLQQS SEQTEEALAQ GLHQLHQSLA DAVGGGPLND GADVANYTGL  420
MALALGRLEN LESFYRQSII AVSVLSAPSG LHVLAKTSLR PRMSALQELN FRLFSNLSKI  480
NSPGSETSSP GGYKFCISAS SKPKPKSLWI GPTDLPRRLG LEVLGLDDGP AGVVVSGRRR  540
RLLSCLIRLR LIDSSWPAAF SPTKVWSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538883.1_FGP024

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639062.2	0.0	transcription factor TGAL5 isoform X6
Refseq	XP_025881197.1	0.0	transcription factor TGAL5 isoform X11
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0D3G888	0.0	A0A0D3G888_9ORYZ; Uncharacterized protein
STRING	OMERI05G15000.1	0.0	(Oryza meridionalis)
STRING	OS05T0443900-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-103	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]