PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538883.1_FGP023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 110aa MW: 12310.3 Da PI: 4.3921 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 24 | 1.1e-07 | 1 | 23 | 106 | 128 |
NAM 106 LvfykgrapkgektdWvmheyrl 128 +vfy+grap g kt+W m+eyr+ KN538883.1_FGP023 1 MVFYRGRAPAGAKTKWKMNEYRA 23 89*******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.089 | 1 | 48 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-7 | 1 | 30 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MVFYRGRAPA GAKTKWKMNE YRAFEEDDDN AAAAAPAPNH YLQDAAESSE KGQKRKRSAP 60 DDRLESTSSS DDNGGCDGSM LQQQQQRQRG TDEELVGCSM TDWADLLDWF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538883.1_FGP023 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 1e-101 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638341.1 | 3e-36 | NAC domain-containing protein 90 | ||||
TrEMBL | A0A0D9ZZV2 | 1e-46 | A0A0D9ZZV2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G19250.1 | 2e-47 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.1 | 2e-08 | NAC domain containing protein 61 |