PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538883.1_FGP023
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 110aa    MW: 12310.3 Da    PI: 4.3921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538883.1_FGP023genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM241.1e-07123106128
                NAM 106 LvfykgrapkgektdWvmheyrl 128
                        +vfy+grap g kt+W m+eyr+
  KN538883.1_FGP023   1 MVFYRGRAPAGAKTKWKMNEYRA 23 
                        89*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.089148IPR003441NAC domain
SuperFamilySSF1019412.88E-7130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVFYRGRAPA GAKTKWKMNE YRAFEEDDDN AAAAAPAPNH YLQDAAESSE KGQKRKRSAP  60
DDRLESTSSS DDNGGCDGSM LQQQQQRQRG TDEELVGCSM TDWADLLDWF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538883.1_FGP023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-101CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638341.13e-36NAC domain-containing protein 90
TrEMBLA0A0D9ZZV21e-46A0A0D9ZZV2_9ORYZ; Uncharacterized protein
STRINGOGLUM05G19250.12e-47(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.12e-08NAC domain containing protein 61