PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538875.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 733aa    MW: 83644.7 Da    PI: 4.6818
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538875.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35401312102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++ ++sws+++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  KN538875.1_FGP013  40 FLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHL 122
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+k 
  KN538875.1_FGP013 123 LKSIKRRKP 131
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-3536129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-6236129IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF039992.5E-16512646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MNYRVVNPVK VESGPSTGVA ANGQPPRPMD GLAEGGPPPF LTKTYDMVDD PTTDAVVSWS  60
ATNNSFVVWD PHLFGNVLLP RYFKHNNFSS FVRQLNTYGF RKVDPDKWEF ANEGFLRGQK  120
HLLKSIKRRK PPNSSPSQQS LGSFLEVGHF GYEGEIDQLK RDKHLLMAEV VKLRQEQQNT  180
KSDLQAMEQK LQGTEQKQQH MMAFLARVMH NPEFIRQLFS QSEMRKELEE FVSKKRRRRI  240
DQGPELDSMG TGSSPEQVSQ VMFEPHDPVD SLFNGVPSDL ESSSVEANGG KAQQDVASSS  300
SEHGKIKPSN GELNEDFWED LLHEGGLDED TRNPAIDDMN LLSQKMGYLN SSSTKSAQVI  360
HEENQTAEGA NQYQNQLDPT TMEGNEDMIL SIKIHTDELH NVWDKLFVHP DERIHILEHL  420
RSQCIDLYIQ RLDYENERAF KLSSSIAKAE DEIDRLCLEL DEAKISIPKE VLSLQAKLDF  480
ITSALEKLRK EESKRRLEFI EVCIINLSVG HLRKIYSLCE VLDKDFVAAI FQRSCNDQHE  540
GCTLEDLEET ERQLTETKKE RLQKLQGIQT KILDLWELME MTISEQHAYR DIMKNLNASL  600
DEVLEYQSLS SDVLKRAETE LMRLENLRLH KIKDIISGKR PEVEEVKRVI ENVKAWELDN  660
KRGFLYQGTE VLGDLERVAD KINMASPNVC SSENSSSSSG DDSMVDPTYQ PPDGNDSDES  720
VDFLMSESQD ELE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-263112917129Heat shock factor protein 1
5d5v_B6e-263112917129Heat shock factor protein 1
5d5v_D6e-263112917129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKSIKRR
2233238KKRRRR
3234239KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538875.1_FGP013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686600.0AK068660.1 Oryza sativa Japonica Group cDNA clone:J013162K14, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-102heat shock transcription factor A6B