PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538873.1_FGP048
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 837aa    MW: 93101.5 Da    PI: 8.9096
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538873.1_FGP048genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.2e-2494138145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  KN538873.1_FGP048  94 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 138
                        79****************************************996 PP
2QLQ57.73.5e-203368237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++
  KN538873.1_FGP048 33 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 68
                       9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-113268IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-133367IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1873368IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.51794138IPR014977WRC domain
PfamPF088791.1E-2095137IPR014977WRC domain
PfamPF125372.3E-22512578IPR022535Golgi pH regulator, conserved domain
PfamPF124309.7E-40655825IPR025969Abscisic acid G-protein coupled receptor-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0010427Molecular Functionabscisic acid binding
GO:0051020Molecular FunctionGTPase binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAMPFASLSP AADHRPSSIF PFCRSSPLSA PPPFTAAQYE ELEQQALIYK YLVAGVPVPA  60
DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC RRTDGKKWRC SKEAAPDSKY  120
CERHMHRGRN RSRKPVEAQL VAPHSQAPAT APAAAVTSTA FQNHSLYPAI ANGGGANGGG  180
GGGGGGGNAP GSFALGSNTQ LHMDNAASYS TVAGAGNKDF RYSAYGVRPL ADEHSPLITG  240
AMDTSIDNSW RLLPSQTSTF SVSSYPMLGN LSELDQNTIC SLPKAEREPL SFFGSDYVTV  300
DSGKQENQTL RPFFDEWPKA RDSWPDLADD NSLATFSATQ LSISIPMATS DFSTTSSRSP  360
NGIYSRWRVV LRAFLPTTGS EEGKLQEKGM LRFAAPAQIV TLHPFEERRA LVQILFGLVF  420
AFSCNLFQLV LFEILPVLSK HARFLNWHLD LFCLILLLVF VLPYYHCYLL LRNSGVRRER  480
ALLVAALFLL VFLYGFWRMG IHFPMPSPEK GFFTMPQLVS RIGVIGVSVM AVLSGFGAVN  540
LPYSYLSLFI REIDEMDIKT LERQLMQSME TCIAKKKKIV LSKMEMERIQ GSEEKLKARS  600
FLKRIVGTVV RSVQEDQTEQ DIKSLDAEVQ ALEELSKQLF LEIYELRQAK IAAAFSRTWR  660
GHAQNLLGYA LSVYCVYKML KSLQSVVFKE AGSVDPVTMT ITIFLRHFDI GIDVTLLSQY  720
ISLIFIGMLV VISVRGFLAN VMKFFFAVSR VGSGSTTNVV LFLSEIMGMY FISSILLIRK  780
SLANEYRVII TDVLGGDIQF DFYHRWFDAI FVASAFLSLL LISAQYTSRQ ADKHPID
Functional Description ? help Back to Top
Source Description
UniProtInvolved in chilling tolerance. {ECO:0000269|PubMed:25728666}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538873.1_FGP048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186060.0AK318606.1 Oryza sativa Japonica Group cDNA, clone: J100078D14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633398.10.0GPCR-type G protein COLD1
SwissprotA2XX570.0COLD1_ORYSI; GPCR-type G protein COLD1
TrEMBLA0A0D3FZS10.0A0A0D3FZS1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DHW90.0A0A0E0DHW9_9ORYZ; Uncharacterized protein
STRINGOS04T0600800-010.0(Oryza sativa)
STRINGOBART04G24060.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-46growth-regulating factor 5
Publications ? help Back to Top
  1. Ma Y, et al.
    COLD1 confers chilling tolerance in rice.
    Cell, 2015. 160(6): p. 1209-21
    [PMID:25728666]