PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538873.1_FGP017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LFY | ||||||||
Protein Properties | Length: 247aa MW: 27258 Da PI: 9.6386 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 401.4 | 1.1e-122 | 2 | 236 | 161 | 386 |
FLO_LFY 161 agsggeglgeaelvaaeekkseeekkkaskk.kqkrkkkkelkseededeeeeededeeg........sgedgeerqrehPfivtepgevar 243 agsgg+g +++ +++ kk+ ++ + a+k k++rkk ++l+ + +ede + ded+ g +g +g erqrehPf+vtepgevar KN538873.1_FGP017 2 AGSGGMGDDDSGRRMVTGKKQAKKGSAARKGkKARRKKVDDLRLDMQEDEMDCCDEDGGGgsestessAGGGGGERQREHPFVVTEPGEVAR 93 67888888888888887766666666665543667777777666644444443333333334455554888899****************** PP FLO_LFY 244 gkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGa 335 +kknGLDYLf+LyeqCr fLlqvq++ak +G+k+Ptkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeas+alrra+k+rgenvGa KN538873.1_FGP017 94 AKKNGLDYLFHLYEQCRLFLLQVQSMAKLHGHKSPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASDALRRAYKARGENVGA 185 ******************************************************************************************** PP FLO_LFY 336 wrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386 wrqacy+plv+i+ar+g+didavf+ahprL+iWYvPt+LrqLCh++rs+++ KN538873.1_FGP017 186 WRQACYAPLVDISARHGFDIDAVFAAHPRLAIWYVPTRLRQLCHQARSSHA 236 ************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.8E-129 | 2 | 236 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAGSGGMGDD DSGRRMVTGK KQAKKGSAAR KGKKARRKKV DDLRLDMQED EMDCCDEDGG 60 GGSESTESSA GGGGGERQRE HPFVVTEPGE VARAKKNGLD YLFHLYEQCR LFLLQVQSMA 120 KLHGHKSPTK VTNQVFRYAK KVGASYINKP KMRHYVHCYA LHCLDEEASD ALRRAYKARG 180 ENVGAWRQAC YAPLVDISAR HGFDIDAVFA AHPRLAIWYV PTRLRQLCHQ ARSSHAAAAA 240 ALPPPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-101 | 74 | 242 | 2 | 170 | PROTEIN LEAFY |
2vy2_A | 1e-101 | 74 | 242 | 2 | 170 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538873.1_FGP017 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005620 | 0.0 | AB005620.1 Oryza sativa mRNA for RFL gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635355.1 | 0.0 | probable transcription factor FL | ||||
Swissprot | A2XX39 | 0.0 | FL_ORYSI; Probable transcription factor FL | ||||
Swissprot | Q0JAI1 | 0.0 | FL_ORYSJ; Probable transcription factor FL | ||||
TrEMBL | A0A0E0H5F5 | 0.0 | A0A0E0H5F5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G23030.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8269 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 7e-99 | floral meristem identity control protein LEAFY (LFY) |