PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538872.1_FGP046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 20347.7 Da PI: 4.4353 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.8e-10 | 28 | 52 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 ++W++Ia++++ gRt++++k++w+++ KN538872.1_FGP046 28 RRWSKIAARLP-GRTDNEIKNHWNTH 52 47*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.168 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-9 | 23 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-8 | 28 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-8 | 28 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-14 | 28 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MDGRRGPEAG HLPPLQWPLL LEARPQARRW SKIAARLPGR TDNEIKNHWN THIKKKLKKM 60 GLDPVTHQPV ISLAQPDPLK QQQQEPSVSG GTGADDKEEE ETPTSAQPQG VACAASSASA 120 VSSSCSSSAS ASAATPGADV DWPGLFEVDA ILDIDWAGLL SACGDDGGCG AIGVDMMFDQ 180 CSDVGFDQDV WM |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538872.1_FGP046 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624871.1 | 3e-86 | protein ODORANT1 | ||||
TrEMBL | A0A0E0NKK4 | 4e-85 | A0A0E0NKK4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X9A4 | 4e-85 | A2X9A4_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI02G33090.1 | 7e-86 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66230.1 | 4e-22 | myb domain protein 20 |