PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538868.1_FGP050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 23208.6 Da PI: 4.7764 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 141 | 189 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl KN538868.1_FGP050 141 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 189 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.397 | 136 | 193 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-20 | 139 | 188 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-12 | 140 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 141 | 189 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.92E-18 | 142 | 215 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-9 | 143 | 189 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-5 | 189 | 214 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAGAEEGRGR QHSSLWMSAT AKGNGDDAPP TGGDDDKATE GIRGSSAGMY TDKRSVSEDT 60 HLCTRSPLLP NTPSPPPPPA ASYTSSPSSG TSDPSVLDLS SAEIDDDGDG DDDRAEQQEI 120 KNSKELVMGR APCCDKASVK KGPWSPEEDA KLKAYIEENG TGGNWIALPQ KIGLKRCGKS 180 CRLRWLNYLR PNIKHGDFTE EEEHIICSLY ISIGSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538868.1_FGP050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004057 | 1e-159 | AP004057.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1316_E06. | |||
GenBank | AP014958 | 1e-159 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624187.1 | 1e-83 | uncharacterized protein LOC4330950 | ||||
TrEMBL | A0A0D9YZD7 | 1e-101 | A0A0D9YZD7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G36330.1 | 1e-102 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 3e-58 | myb domain protein 84 |