PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538868.1_FGP011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 405aa MW: 44550.3 Da PI: 4.727 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 159 | 208 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f +aeeAa+a++a +++++g KN538868.1_FGP011 159 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSAEEAARAYDAEARRIRG 208 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.32E-31 | 159 | 218 | No hit | No description |
SuperFamily | SSF54171 | 4.77E-21 | 159 | 216 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.9E-36 | 159 | 222 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 159 | 217 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 159 | 216 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-11 | 160 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 160 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 182 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MAINRVATRC THAPAAHAPR SGSERGGGWV MEDTSTSACI YRDLFHGGAL QGHPEGSRRA 60 TEGLLWPEKK KPRWGGGGRR HFGGFVEEDD EDFEADFEEF EVDSGDSDLE LGEEDDDDVV 120 EIKPAAFKRA LSRDNLSTIT TAGFDGPAAK SAKRKRKNQF RGIRQRPWGK WAAEIRDPRK 180 GVRVWLGTFN SAEEAARAYD AEARRIRGKK AKVNFPEAPT TAQKRRAGST TAKAPKSSVE 240 QKPTVRPAFN NLSNTNAFVY PSANFTSNKP FVQPDNMPFV PSMNSIAPIE DPIINSDQGS 300 NSFGCSDFGW ENDTKTPDIT SIAPISTIAE VDESAFIKSN TNPMIPPVME NSAVDLPDLE 360 PYMRFLLDDG AGDSIDSLLN LDGSQDVVSN MDLWSFDDMP VSDFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-19 | 158 | 216 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 7e-19 | 159 | 217 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538868.1_FGP011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064027 | 0.0 | AK064027.1 Oryza sativa Japonica Group cDNA clone:001-125-B02, full insert sequence. | |||
GenBank | AK103783 | 0.0 | AK103783.1 Oryza sativa Japonica Group cDNA clone:J033145H23, full insert sequence. | |||
GenBank | EU837255 | 0.0 | EU837255.1 Oryza sativa Japonica Group clone KCS057H03 EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625463.1 | 0.0 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 0.0 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0D3FBA6 | 0.0 | A0A0D3FBA6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NLT2 | 0.0 | A0A0E0NLT2_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1P4X1 | 0.0 | I1P4X1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q0DX05 | 0.0 | Q0DX05_ORYSJ; EREBP transcription factor | ||||
STRING | ORUFI02G36450.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0782700-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA02G0302700.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART02G34990.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.1 | 2e-37 | related to AP2 2 |