PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538863.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 163aa MW: 18741.4 Da PI: 9.1371 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.1 | 3.9e-10 | 97 | 130 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+++gL+ +q+ +WF N+R ++ KN538863.1_FGP003 97 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 130 69*****************************985 PP | |||||||
2 | ELK | 34.3 | 5.1e-12 | 50 | 71 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ KN538863.1_FGP003 50 ELKEMLLKKYSGCLSRLRSEFL 71 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 6.0E-9 | 50 | 71 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 50 | 71 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 50 | 70 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.843 | 70 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-13 | 72 | 137 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-19 | 72 | 135 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 75 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.95E-13 | 82 | 134 | No hit | No description |
Pfam | PF05920 | 2.4E-17 | 90 | 129 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSCKMVIPRS LVYNFMADEM VGSSDEDQCS GETDMLDIGQ EQSSRLADHE LKEMLLKKYS 60 GCLSRLRSEF LKKRKKGKLP KDARSALLEW WNTHYRWPYP TEEDKLRLAA RTGLDPKQIN 120 NWFINQRKRH WKPSDGMRFA LMEGVAGGSS GTTLYFDTGT IGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 74 | LRSEFLKKRK |
2 | 71 | 75 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00670 | PBM | Transfer from GRMZM2G087741 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538863.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241312 | 0.0 | AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634297.1 | 1e-105 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 1e-106 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0D3EMI9 | 1e-104 | A0A0D3EMI9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9Y7A2 | 1e-104 | A0A0D9Y7A2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0MV67 | 1e-104 | A0A0E0MV67_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1NM88 | 1e-104 | I1NM88_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM01G14210.1 | 1e-105 | (Oryza glumipatula) | ||||
STRING | ORUFI01G13730.1 | 1e-105 | (Oryza rufipogon) | ||||
STRING | OS01T0302500-01 | 1e-105 | (Oryza sativa) | ||||
STRING | ORGLA01G0097800.1 | 1e-105 | (Oryza glaberrima) | ||||
STRING | OBART01G11630.1 | 1e-105 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 9e-41 | KNOTTED-like from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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