PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538861.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 357aa    MW: 39743.3 Da    PI: 8.6516
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538861.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.3e-1834116797
                        .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +  + + + +++p +f++++ggk   + t++le+++g  + v++  + + +++vl+ GW+ Fv+a+++k+gD+++F+++++s+f   v+++
  KN538861.1_FGP012  34 T--ADSMHSMIIPDRFVNHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTVLQCGWEAFVDAHHIKVGDSLLFRHIENSCF--EVMIL 116
                        3..4455669*******888888..5669***************..**************************************..66665 PP
2B343.94.4e-142683511496
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                        ++l l  ++a++  ++ ++  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L +gD+++++l+++ s+ +++v+ 
  KN538861.1_FGP012 268 CQLELGARYAAAVHLPDRR--QTVVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLGVGDICLLELKKHdSKLTMTVHT 351
                        7778888888888777555..3566778*********..555555224445557*********************9776999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-2423121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.57626119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-2026121IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-2028117No hitNo description
SMARTSM010193.2E-1128119IPR003340B3 DNA binding domain
PfamPF023621.8E-1634116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-17244350IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16245350IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-15250350No hitNo description
PROSITE profilePS5086310.25255353IPR003340B3 DNA binding domain
SMARTSM010190.011260356IPR003340B3 DNA binding domain
PfamPF023622.5E-12268352IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAGGGSRMKK SCACCKRYLE HLGGKMSCFL IRMTADSMHS MIIPDRFVNH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT VLQCGWEAFV DAHHIKVGDS LLFRHIENSC FEVMILDSDG  120
CERVFSCAGI KTSSCVHDKT VDPVDTSGRS SDDTAQPSRS ERFARCQRDT SNDRRNTASL  180
TAVSSSSEES ENVSLKSNRN GVSDESQESE DSEGPAGPPY ILSWKSKSRL SSLQKKIIKE  240
KVRSIQSEVP IYVAIMNKSN IGLTSSPCQL ELGARYAAAV HLPDRRQTVV LQRMGQRWDT  300
VMQTKSGRCT TRRFLINGWS RFVRDNRLGV GDICLLELKK HDSKLTMTVH TIFSQQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538861.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689972.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0619800-like
SwissprotQ10GP01e-136Y3198_ORYSJ; Putative B3 domain-containing protein Os03g0619850
TrEMBLA2XJL90.0A2XJL9_ORYSI; Uncharacterized protein
STRINGORUFI03G27190.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-13B3 family protein