PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538859.1_FGP013

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 337aa MW: 37939.7 Da PI: 8.5336

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538859.1_FGP013	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.8	2e-24	13	101	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+ ++ + + +rtgC+a+l+++++k +k ev+ ++ HnH+l+ KN538859.1_FGP013 13 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 101 6****************************************9988..9999***************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-21	13	101	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGMEFESEHE AYEFYRYYGW KVGFNVRKEY ANKSKKTGEI TSRKFACSRE GYRANVKRGN 60 HMVPMPDSRT GCNAHLVIRR KKPGAKLEVY AFQPRHNHPL FATSCMPNPL QPNVVHWTTL 120 PDAVTPPDLL MDRECEESYR VLDQCWVDLS NKVEEILQKQ TCVDATLTQT DVQNLKVSLP 180 SITNGTQAEN IMDKSSGTTA KESKKKGQKN KIQSRNCIEK GLRKKQKVHS EQPAEYALLG 240 GSQSGNMFQA FEGPPNMSPL GTQTPTYKTY RGIDLSSPMG PISYDEMPSG LDPTFTTHLG 300 FATYHTSQVS SSSPHNQQPD ENFCTKTSEL NNLHSSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538859.1_FGP013

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072998	0.0	AK072998.1 Oryza sativa Japonica Group cDNA clone:J023143C23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880889.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880890.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880891.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880892.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880893.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880894.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880895.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880896.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880897.1	1e-122	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880898.1	1e-122	protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A0D9ZKQ7	0.0	A0A0D9ZKQ7_9ORYZ; Uncharacterized protein
STRING	OMERI04G10160.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15895	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	8e-18	FAR1 family protein