PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538857.1_FGP022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 719aa MW: 79363.4 Da PI: 6.7316 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 5 | 63 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps ++r++L + + +++ +q+kvWFqNrR ++k+ KN538857.1_FGP022 5 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCpilaNIEPKQIKVWFQNRRCRDKQ 63 5678****************************************************996 PP | |||||||
2 | START | 155 | 6.3e-49 | 143 | 344 | 2 | 198 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ g g++ KN538857.1_FGP022 143 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTI 233 7899******************************************************9999999999.***********999999999*** PP EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 +l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl+++++++ KN538857.1_FGP022 234 ELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPE 325 *****************************************9999998888899************************************** PP HHHHHHHHHHHHHHHHHHH CS START 180 llrslvksglaegaktwva 198 +lr+l++s+++ ++k+++a KN538857.1_FGP022 326 VLRPLYESSRVVAQKMTTA 344 ***************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.483 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 2 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.77E-16 | 5 | 65 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-16 | 5 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.0E-16 | 6 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-18 | 7 | 60 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.49E-6 | 57 | 96 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.7E-4 | 61 | 111 | No hit | No description |
PROSITE profile | PS50848 | 26.319 | 133 | 334 | IPR002913 | START domain |
CDD | cd08875 | 1.66E-70 | 137 | 342 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.1E-21 | 142 | 325 | IPR023393 | START-like domain |
SMART | SM00234 | 1.6E-33 | 142 | 352 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-35 | 143 | 333 | No hit | No description |
Pfam | PF01852 | 9.8E-47 | 143 | 344 | IPR002913 | START domain |
Pfam | PF08670 | 5.0E-15 | 670 | 718 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 719 aa Download sequence Send to blast |
MDSGKYVRYT PEQVEALERV YAECPKPSSS RRQQLLRDCP ILANIEPKQI KVWFQNRRCR 60 DKQRKEASRL QAVNRKLTAM NKLLMEENER LQKQVSQLVH ENAYMKQQLQ NPSLGNDTSC 120 ESNVTTPQNP LRDASNPSGL LTIAEETLTE FLSKATGTAV DWVPMPGMKP GPDSFGIVAV 180 SHGCRGVAAR ACGLVNLEPT KIVEILKDRP SWFRDCRSLE VFTMFPAGNG GTIELVYMQM 240 YAPTTLVPAR DFWTLRYTTT MEDGSLVVCE RSLSGSGGGP STASAQQFVR AEMLPSGYLV 300 RPCEGGGSIV HIVDHLDLEA WSVPEVLRPL YESSRVVAQK MTTAKYPLFP YDWSFPQDLQ 360 LHGFNDAISG FNDDGWSVMG GDGIEDVIIA CNAKKVRNTS TSANAFVTPG GVICAKASML 420 LQSVPPAVLV RFLREHRSEW ADYNFDAYSA SSLKTSSCSL PGLRPMRFSG SQIIMPLAHT 480 VENEEILEVV RLEGQALTHD DGLMSRDIHL LQALRHIRQI AQETSGEVVY ALGRQPAVLR 540 TFSQRLSRGF NDAISGFNDD GWSVMGGDGI EDVIIACNAK KVRNTSTSAN AFVTPGGVIC 600 AKASMLLQSV PPAVLVRFLR EHRSEWADYN FDAYSASSLK TSSCSLPGLR PMRFSGSQII 660 MPLAHTVENE EGYVYLPGGV CLSGMGRHVS FEQAVAWKVL GEDNNVHCLA FCFVNWSFV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538857.1_FGP022 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK102830 | 0.0 | AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614901.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
Swissprot | Q9AV49 | 0.0 | HOX9_ORYSJ; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A0D3HES9 | 0.0 | A0A0D3HES9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D3HET0 | 0.0 | A0A0D3HET0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART10G13430.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|